SRR1545522_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545522_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1570982
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8123	0.5170651223247624	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5352	0.3406786328551186	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1590	0.10121058038857224	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	70	0.0	45.000004	1
GACGTAT	45	3.8562575E-10	45.000004	14
CACGATA	35	1.2123019E-7	45.000004	14
TCATCGA	280	0.0	45.000004	16
ATAACGG	125	0.0	45.000004	2
GGTACGA	20	7.0340786E-4	45.0	18
CACGGAT	20	7.0340786E-4	45.0	39
ATTACGT	25	3.8914615E-5	45.0	28
CAACCTA	20	7.0340786E-4	45.0	37
CGACATA	20	7.0340786E-4	45.0	41
TCTAGCG	50	2.1827873E-11	45.0	1
ACCTCAT	25	3.8914615E-5	45.0	19
CGTTACG	25	3.8914615E-5	45.0	24
CCGTAAA	25	3.8914615E-5	45.0	39
TCGTGCA	20	7.0340786E-4	45.0	18
GTTCGAC	20	7.0340786E-4	45.0	30
CACTACG	20	7.0340786E-4	45.0	1
GAACGTA	40	6.8175723E-9	45.0	9
CAAGCTA	25	3.8914615E-5	45.0	32
TACTCGA	20	7.0340786E-4	45.0	40