SRR1545520_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545520_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2847052
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16369	0.5749455928448093	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8220	0.2887197002372981	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4265	0.1498040780428317	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCTA	20	7.035044E-4	45.000004	12
ACATTCG	20	7.035044E-4	45.000004	22
CCGTCTA	20	7.035044E-4	45.000004	35
CTCGAAT	20	7.035044E-4	45.000004	37
ATCGATC	20	7.035044E-4	45.000004	18
TCGTTAA	35	1.2127748E-7	45.0	35
CGTAAGT	30	2.1666365E-6	44.999996	20
GCGTAAG	190	0.0	43.81579	1
CGTAAGG	485	0.0	43.144333	2
CGTTTTT	12465	0.0	42.220215	1
TGTCACG	80	0.0	42.187504	1
CGACGGT	370	0.0	41.959457	28
CGGTCTA	375	0.0	41.4	31
CGTTAGG	305	0.0	41.311478	2
AGCTACG	270	0.0	40.833332	9
TATTGCG	155	0.0	40.64516	1
ACGTAAG	140	0.0	40.17857	1
AAGGGAC	1965	0.0	40.076336	5
GTCGACG	90	0.0	40.0	1
ATCGCAA	45	1.9299478E-8	40.0	10