SRR1545518_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545518_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1238206
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5260	0.42480814985551674	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3692	0.29817332495562127	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1421	0.11476281006553028	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGC	20	7.033497E-4	45.000004	18
CGGCACT	20	7.033497E-4	45.000004	28
TAACGCG	20	7.033497E-4	45.000004	1
ACTAGTC	20	7.033497E-4	45.000004	33
TTGACGT	20	7.033497E-4	45.000004	25
AACGCAC	20	7.033497E-4	45.000004	40
ACGTCCG	20	7.033497E-4	45.000004	23
CAGTCGA	20	7.033497E-4	45.000004	39
TACACCG	20	7.033497E-4	45.000004	19
AAATGCG	50	2.1827873E-11	45.0	1
CCTTCGT	30	2.1656397E-6	44.999996	28
ACACGAT	30	2.1656397E-6	44.999996	33
CCACGAA	30	2.1656397E-6	44.999996	19
CGGTCTA	145	0.0	43.448273	31
CGCATCG	90	0.0	42.500004	21
GTTGATC	640	0.0	41.83594	16
CTACGAA	205	0.0	41.707314	11
CGAATAT	205	0.0	41.707314	14
ATCCCGT	65	0.0	41.538464	19
CGTTTTT	4385	0.0	41.356895	1