SRR1545515_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545515_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	470828
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1933	0.41055332308188974	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1540	0.3270833510326489	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	587	0.12467397860789926	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAA	30	2.1627602E-6	45.000004	6
TCTTGCG	30	2.1627602E-6	45.000004	1
AGTCCAT	30	2.1627602E-6	45.000004	38
CTAAGCG	30	2.1627602E-6	45.000004	1
GTAATCC	45	3.8380676E-10	45.000004	9
TCGCTAT	30	2.1627602E-6	45.000004	23
TCGAGAG	45	3.8380676E-10	45.000004	1
TAGTGCG	30	2.1627602E-6	45.000004	1
CAATACG	30	2.1627602E-6	45.000004	1
TGTCACG	20	7.02904E-4	45.0	1
GGTACGA	25	3.887285E-5	45.0	21
CACGGGT	25	3.887285E-5	45.0	4
CGACGGT	85	0.0	45.0	28
TCCGATC	20	7.02904E-4	45.0	14
GACGTCG	25	3.887285E-5	45.0	19
GACCGAA	20	7.02904E-4	45.0	9
CCTACTG	20	7.02904E-4	45.0	24
AAGCGAC	25	3.887285E-5	45.0	15
GGATACC	20	7.02904E-4	45.0	8
ACGGGTA	50	2.1827873E-11	45.0	5