SRR1545509_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545509_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	160628
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	851	0.5297955524566078	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	366	0.22785566650895236	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	280	0.1743158104440073	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGAA	65	0.0	45.000004	5
TCACGAC	20	7.0151547E-4	45.0	25
CTTAAGG	25	3.8757826E-5	45.0	2
CTCACGA	20	7.0151547E-4	45.0	24
ACGCCGG	20	7.0151547E-4	45.0	27
CGACGGT	20	7.0151547E-4	45.0	28
CATGAGG	40	6.7520887E-9	45.0	2
CACGCCG	20	7.0151547E-4	45.0	26
TGACGTG	20	7.0151547E-4	45.0	13
CGCGACC	20	7.0151547E-4	45.0	10
GTGGCGA	20	7.0151547E-4	45.0	28
CGCTGAA	20	7.0151547E-4	45.0	37
CGTTAGG	20	7.0151547E-4	45.0	2
AGACGTG	20	7.0151547E-4	45.0	24
AACGGGA	45	3.8016879E-10	45.0	4
ACCTATG	40	6.7520887E-9	45.0	34
TAGGGTG	35	1.2032251E-7	45.0	5
GACGGTC	20	7.0151547E-4	45.0	29
CGGGACC	20	7.0151547E-4	45.0	6
GCGATCA	20	7.0151547E-4	45.0	9