SRR1545504_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545504_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2056295
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10017	0.4871382753933652	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	5769	0.2805531307521537	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4452	0.21650590017482899	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGA	20	7.034586E-4	45.000004	38
GACCCGT	20	7.034586E-4	45.000004	9
TACGCCC	20	7.034586E-4	45.000004	12
GTCGTTA	20	7.034586E-4	45.000004	41
TTCGGTA	30	2.16634E-6	45.000004	35
ATCGCTA	20	7.034586E-4	45.000004	41
CGTTAGT	25	3.8918843E-5	45.0	34
GTCGTAC	35	1.2125565E-7	45.0	11
ATCGGCA	35	1.2125565E-7	45.0	27
CGGTACC	45	3.8562575E-10	45.0	14
ATCGACG	45	3.8562575E-10	45.0	1
ACGTTAG	115	0.0	43.04348	1
TCGTTAG	80	0.0	42.187504	1
TAGCCGT	75	0.0	42.000004	44
ACGGGAT	740	0.0	41.655403	5
CGTAAGG	260	0.0	41.538464	2
CGACGGT	310	0.0	41.37097	28
ACGTAGG	360	0.0	41.25	2
GCGTAAG	170	0.0	41.02941	1
GGCGATA	1005	0.0	40.97015	8