FastQCFastQC Report
Thu 26 May 2016
SRR1545504_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545504_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences2056295
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT100170.4871382753933652No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT57690.2805531307521537No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC44520.21650590017482899No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACCGA207.034586E-445.00000438
GACCCGT207.034586E-445.0000049
TACGCCC207.034586E-445.00000412
GTCGTTA207.034586E-445.00000441
TTCGGTA302.16634E-645.00000435
ATCGCTA207.034586E-445.00000441
CGTTAGT253.8918843E-545.034
GTCGTAC351.2125565E-745.011
ATCGGCA351.2125565E-745.027
CGGTACC453.8562575E-1045.014
ATCGACG453.8562575E-1045.01
ACGTTAG1150.043.043481
TCGTTAG800.042.1875041
TAGCCGT750.042.00000444
ACGGGAT7400.041.6554035
CGTAAGG2600.041.5384642
CGACGGT3100.041.3709728
ACGTAGG3600.041.252
GCGTAAG1700.041.029411
GGCGATA10050.040.970158