SRR1545501_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545501_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1753560
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9314	0.5311480645087707	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3706	0.21134149957800133	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	20	7.034301E-4	45.000004	34
ATTACGC	20	7.034301E-4	45.000004	11
GTCGTAC	30	2.166158E-6	45.000004	19
AGTACGC	20	7.034301E-4	45.000004	21
TCGCGAC	20	7.034301E-4	45.000004	29
ACGCGCC	20	7.034301E-4	45.000004	35
AACCGTA	25	3.891648E-5	45.0	12
ATCGTAG	35	1.212411E-7	45.0	1
TACAACG	45	3.8562575E-10	45.0	1
TACCGGA	25	3.891648E-5	45.0	14
AATCGTG	100	0.0	42.75	1
CGCATCG	85	0.0	42.35294	21
CGTTTTT	6905	0.0	41.80666	1
TATTACG	55	6.184564E-11	40.909092	1
TAACGGG	525	0.0	40.714283	3
TATAGCG	155	0.0	40.64516	1
CTAACGG	50	1.0822987E-9	40.5	2
GGACGTA	50	1.0822987E-9	40.5	8
CGACGGT	295	0.0	40.42373	28
CACGACG	295	0.0	40.42373	26