##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545488_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2443758 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.036703306955925 31.0 31.0 33.0 30.0 34.0 2 31.325420520362492 31.0 31.0 34.0 30.0 34.0 3 31.41626503115284 31.0 31.0 34.0 30.0 34.0 4 35.2168160677121 37.0 35.0 37.0 33.0 37.0 5 35.08358970078052 37.0 35.0 37.0 32.0 37.0 6 35.13693008882222 37.0 35.0 37.0 32.0 37.0 7 35.73770111443113 37.0 35.0 37.0 35.0 37.0 8 35.738880854814596 37.0 35.0 37.0 35.0 37.0 9 37.427638906962144 39.0 37.0 39.0 35.0 39.0 10 36.58003533901475 39.0 35.0 39.0 32.0 39.0 11 36.303530464145794 38.0 35.0 39.0 32.0 39.0 12 35.746115204533346 37.0 35.0 39.0 30.0 39.0 13 35.51018104083956 37.0 35.0 39.0 30.0 39.0 14 36.46436799388483 38.0 35.0 40.0 30.0 41.0 15 36.65191070474245 38.0 35.0 40.0 31.0 41.0 16 36.71613719525419 38.0 35.0 40.0 31.0 41.0 17 36.636279860771815 38.0 35.0 40.0 31.0 41.0 18 36.52144238504795 38.0 35.0 40.0 31.0 41.0 19 36.449433209016604 38.0 35.0 40.0 30.0 41.0 20 36.332958091594996 38.0 35.0 40.0 30.0 41.0 21 36.20702786446121 38.0 34.0 40.0 30.0 41.0 22 36.12674741115937 38.0 34.0 40.0 30.0 41.0 23 36.0527511316587 38.0 34.0 40.0 30.0 41.0 24 35.956458045354736 38.0 34.0 40.0 30.0 41.0 25 35.83345077540411 37.0 34.0 40.0 30.0 41.0 26 35.67929844117134 37.0 34.0 40.0 29.0 41.0 27 35.59284880090418 37.0 34.0 40.0 29.0 41.0 28 35.57537612153086 37.0 34.0 40.0 29.0 41.0 29 35.53664438131763 37.0 34.0 40.0 29.0 41.0 30 35.42823389222664 37.0 34.0 40.0 29.0 41.0 31 35.27071624931765 37.0 34.0 40.0 27.0 41.0 32 35.12807405643276 37.0 34.0 40.0 27.0 41.0 33 34.889840156022 37.0 33.0 40.0 25.0 41.0 34 34.69291230964768 37.0 33.0 40.0 25.0 41.0 35 34.500116214453314 37.0 33.0 40.0 24.0 41.0 36 34.358386959756245 37.0 33.0 40.0 23.0 41.0 37 34.299601679053325 37.0 33.0 40.0 23.0 41.0 38 34.24684604613059 36.0 33.0 40.0 23.0 41.0 39 34.172028081340294 36.0 33.0 40.0 23.0 41.0 40 34.05418007838747 36.0 33.0 40.0 23.0 41.0 41 33.95704689253191 36.0 33.0 40.0 23.0 41.0 42 33.9066679270206 36.0 33.0 40.0 23.0 41.0 43 33.82910910163773 36.0 33.0 40.0 23.0 41.0 44 33.7071170713303 36.0 33.0 40.0 23.0 41.0 45 33.62855978374291 35.0 32.0 40.0 23.0 41.0 46 33.54931380275789 35.0 32.0 40.0 23.0 41.0 47 33.451795963430094 35.0 32.0 39.0 22.0 41.0 48 33.37407018207204 35.0 32.0 39.0 22.0 41.0 49 33.33161262285382 35.0 32.0 39.0 22.0 41.0 50 33.274600430975575 35.0 32.0 39.0 22.0 41.0 51 33.111329354215925 35.0 32.0 39.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 1.0 13 11.0 14 34.0 15 114.0 16 308.0 17 830.0 18 2035.0 19 3649.0 20 6081.0 21 9439.0 22 14107.0 23 19695.0 24 27392.0 25 37627.0 26 46966.0 27 53949.0 28 59842.0 29 66917.0 30 79503.0 31 94434.0 32 114308.0 33 142445.0 34 213083.0 35 274444.0 36 197455.0 37 236604.0 38 316374.0 39 425924.0 40 184.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.56995987327714 23.44761633516903 27.520155432739244 16.46226835881458 2 32.67258869331579 25.115580184289932 29.23616004530727 12.97567107708701 3 28.24133977259614 25.20053131283867 32.81302813126341 13.745100783301783 4 24.816941775740478 28.2096263214279 32.38385306564726 14.58957883718437 5 22.182147332100804 31.786903613205563 31.999649719816777 14.031299334876856 6 20.1662357729366 40.770239933741394 28.608274632758235 10.455249660563771 7 86.76067761210398 3.7492664985649156 7.896649340892184 1.5934065484389206 8 87.87101668823182 2.8842463124417392 7.5932232242308775 1.65151377509557 9 83.03048010482217 4.465131162741973 9.462843702199645 3.041545030236218 10 41.655884093269464 26.12300399630405 17.38547761275871 14.835634297667772 11 36.725608673199226 24.63656384961195 23.41258831684643 15.22523916034239 12 34.067407656568285 21.87139643123419 26.51571882322227 17.545477088975257 13 23.941159476511174 29.998796934884712 26.944975730002724 19.115067858601385 14 19.71238559628245 32.5334996345792 28.98093837442169 18.77317639471666 15 19.518544798625722 23.390695805394806 39.16979504517223 17.92096435080724 16 21.53863025716949 20.50636765178876 38.451393304901714 19.503608786140035 17 21.42523932402472 20.85153276224569 30.064106184000217 27.659121729729375 18 23.436404095659228 22.621798066748017 32.704383985648334 21.237413851944424 19 28.009033627716 24.927222744641657 26.938428436858313 20.12531519078403 20 30.16706236869608 24.461341916834645 25.919219497184255 19.452376217285018 21 25.195088875412374 26.487933747940673 28.78938912936551 19.52758824728144 22 24.340298834827344 23.982243740992356 27.69263568651233 23.984821737667968 23 22.340428143866948 27.39522489542745 27.228923649559405 23.035423311146193 24 22.405000822503702 24.185700875454934 34.13918235766389 19.270115944377473 25 22.25768672675445 24.704451095403062 31.98725078342455 21.050611394417942 26 20.646561566243467 29.242911941362443 28.097872211569232 22.01265428082486 27 20.569999157036005 28.422126904546197 28.99648819563967 22.01138574277813 28 19.459823763236788 27.328565267100917 33.11285323669529 20.098757732967012 29 20.717517855696023 25.100644171804248 32.90976438747209 21.272073585027652 30 22.495271626732272 26.729733467880205 30.39007954142759 20.384915363959934 31 26.64952912686117 25.516233604145743 27.419368038897467 20.414869230095615 32 28.708816503107098 25.069544529368294 27.06339989475226 19.158239072772346 33 26.6690891651301 25.59594689817895 26.71316063210842 21.02180330458253 34 22.741654451872893 26.92746172084143 28.39213211782836 21.938751709457318 35 22.451732127321936 25.89335768926383 30.345803471538506 21.309106711875724 36 27.377383521608934 26.786408474161515 25.716785377275492 20.11942262695406 37 22.90144932517868 30.35034565615744 27.197210198391165 19.55099482027271 38 23.54222472110577 29.82324763745019 25.321574394845968 21.312953246598067 39 22.716815658506285 29.581284235182043 25.703486188075907 21.998413918235766 40 25.138372948548916 25.476254195382687 27.13873468649514 22.246638169573256 41 20.506244890042304 25.606586249538623 28.11583634713421 25.771332513284868 42 22.68878505973177 26.6826338778226 25.31036215533617 25.318218907109458 43 22.18857186349876 26.088303342638675 27.11414141662145 24.608983377241117 44 21.99685893611397 27.70744893725156 28.2693294507885 22.026362675845974 45 21.115920643533443 30.461526877865975 25.605194949745435 22.817357528855148 46 22.859628490218753 29.17473825149626 26.544526913057677 21.421106345227308 47 22.319886011626355 27.489628678453432 27.253557840015258 22.93692746990496 48 23.054492302429292 25.45321590763079 28.940590680419255 22.551701109520664 49 22.524939048792884 25.502647970871095 29.52456830831858 22.447844672017442 50 21.477535828015704 29.224170314736565 27.426815584849233 21.871478272398495 51 20.45026553365759 29.881804990510517 27.024607182871623 22.64332229296027 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2586.0 1 3147.0 2 3708.0 3 17220.5 4 30733.0 5 21406.5 6 12080.0 7 12502.5 8 12925.0 9 13467.5 10 14010.0 11 14374.0 12 14738.0 13 14671.5 14 14605.0 15 14059.0 16 13513.0 17 13051.0 18 12589.0 19 12521.5 20 12454.0 21 12302.5 22 12151.0 23 12067.5 24 11984.0 25 12644.0 26 15405.0 27 17506.0 28 20065.0 29 22624.0 30 27720.0 31 32816.0 32 40413.0 33 48010.0 34 53164.0 35 58318.0 36 65058.5 37 71799.0 38 79243.0 39 86687.0 40 109829.5 41 132972.0 42 152638.0 43 172304.0 44 177279.5 45 182255.0 46 182146.5 47 182038.0 48 181676.0 49 181314.0 50 175041.0 51 168768.0 52 162681.0 53 156594.0 54 145335.0 55 134076.0 56 131584.5 57 129093.0 58 124356.5 59 119620.0 60 113616.5 61 107613.0 62 92548.0 63 77483.0 64 67190.0 65 56897.0 66 48197.5 67 39498.0 68 34216.0 69 28934.0 70 23991.0 71 19048.0 72 17187.0 73 15326.0 74 12769.0 75 7608.0 76 5004.0 77 3980.0 78 2956.0 79 2254.0 80 1552.0 81 1092.0 82 632.0 83 427.0 84 222.0 85 172.0 86 122.0 87 82.5 88 43.0 89 34.0 90 25.0 91 18.0 92 11.0 93 6.5 94 2.0 95 2.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2443758.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.863455774269774 #Duplication Level Percentage of deduplicated Percentage of total 1 78.5889514580615 14.824592101753773 2 5.862442412813859 2.2117184636663527 3 2.4731301821377585 1.3995534544430208 4 1.489432804040714 1.123833993110745 5 1.0200563255744493 0.9620893692368876 6 0.7596512881935205 0.859778908722332 7 0.6081917333613988 0.8030818505177456 8 0.4585887563654458 0.6920454979421571 9 0.4124613625586546 0.7002402004098209 >10 5.344836983244095 24.55730526109798 >50 2.1075642385215057 28.624197055429708 >100 0.8712024121580453 21.86064885887556 >500 0.002617532226821299 0.33715376137186603 >1k 6.543830567053247E-4 0.27033197610607274 >5k 0.0 0.0 >10k+ 2.181276855684416E-4 0.7734292473159589 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18797 0.7691841827218571 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.016572835771790823 0.0 2 0.0 0.0 0.0 0.05818906782095445 0.0 3 0.0 0.0 0.0 0.10136028199191573 0.0 4 0.0 0.0 0.0 0.15234732735401788 0.0 5 0.0 0.0 0.0 0.2394263261746867 0.0 6 0.0 0.0 0.0 0.453768335489848 0.0 7 0.0 0.0 0.0 0.5690825359957901 0.0 8 0.0 0.0 0.0 0.9058998476935932 0.0 9 0.0 0.0 0.0 1.087464470704546 0.0 10 0.0 0.0 0.0 1.3284457790010304 0.0 11 0.0 0.0 0.0 1.452762507580538 0.0 12 0.0 0.0 0.0 1.5522404427934353 0.0 13 4.092058215256993E-5 0.0 0.0 1.6079742756852355 0.0 14 4.092058215256993E-5 0.0 0.0 1.6384191888067476 0.0 15 4.092058215256993E-5 0.0 0.0 1.6611710324835764 0.0 16 4.092058215256993E-5 0.0 0.0 1.7071248462409125 0.0 17 4.092058215256993E-5 0.0 0.0 1.75246485126596 0.0 18 4.092058215256993E-5 0.0 0.0 1.8266129461264167 0.0 19 4.092058215256993E-5 0.0 0.0 1.8617228056133217 0.0 20 4.092058215256993E-5 0.0 0.0 1.904894019784283 0.0 21 4.092058215256993E-5 0.0 0.0 1.9526074185741795 0.0 22 4.092058215256993E-5 0.0 0.0 2.004331034415028 0.0 23 4.092058215256993E-5 0.0 0.0 2.059901184978218 0.0 24 4.092058215256993E-5 0.0 0.0 2.107082616200131 0.0 25 4.092058215256993E-5 0.0 0.0 2.152545382971636 0.0 26 8.184116430513987E-5 0.0 0.0 2.193711488617122 0.0 27 8.184116430513987E-5 0.0 0.0 2.241915934392849 0.0 28 1.227617464577098E-4 0.0 0.0 2.2868058130142184 0.0 29 1.227617464577098E-4 0.0 0.0 2.338979555258745 0.0 30 2.0460291076284968E-4 0.0 0.0 2.423194113328734 0.0 31 2.0460291076284968E-4 0.0 0.0 2.4818742281355193 0.0 32 2.0460291076284968E-4 0.0 0.0 2.539817772463558 0.0 33 2.0460291076284968E-4 0.0 0.0 2.6005029957958192 0.0 34 2.0460291076284968E-4 8.184116430513987E-5 0.0 2.6664260536436095 0.0 35 2.0460291076284968E-4 8.184116430513987E-5 0.0 2.737382343096166 0.0 36 2.0460291076284968E-4 1.227617464577098E-4 0.0 2.802814353958125 0.0 37 2.0460291076284968E-4 1.227617464577098E-4 0.0 2.8716427731387477 0.0 38 2.0460291076284968E-4 1.227617464577098E-4 0.0 2.955448125387211 0.0 39 2.0460291076284968E-4 1.227617464577098E-4 0.0 3.0769822543803436 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGTCG 20 7.034848E-4 45.0 1 CGTTTTT 12780 0.0 42.728874 1 CGGTCTA 320 0.0 41.484375 31 TATAGCG 195 0.0 40.384617 1 GCGATAT 290 0.0 40.344826 9 GTACGTC 45 1.9297659E-8 40.0 44 CGCATCG 315 0.0 38.57143 21 ATAGGGC 1490 0.0 38.355705 4 TAACGCC 360 0.0 38.125 12 CGACGGT 355 0.0 38.028168 28 GACCGAT 1575 0.0 38.0 9 TAGGGCG 1475 0.0 37.983047 5 GCGCGAC 1105 0.0 37.873302 9 CGTAAGG 435 0.0 37.75862 2 ACGGGAC 620 0.0 37.741936 5 GGCGATA 1130 0.0 37.234516 8 AGGGCGA 3305 0.0 37.102875 6 TAAGGGA 2615 0.0 36.91205 4 GGGCGAT 5655 0.0 36.68435 7 ACGGGTA 505 0.0 36.534657 5 >>END_MODULE