SRR1545485_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545485_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	395629
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1643	0.4152880602786954	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1177	0.29750094153866374	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	481	0.12157854960076232	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	20	7.0276705E-4	45.000004	1
CACGGCA	20	7.0276705E-4	45.000004	35
CGACGGT	40	6.7957444E-9	45.000004	28
GGCGTAG	20	7.0276705E-4	45.000004	1
TCGATAG	30	2.161878E-6	45.000004	1
GTTGTAC	20	7.0276705E-4	45.000004	44
CTACGAA	30	2.161878E-6	45.000004	11
TACGAAT	30	2.161878E-6	45.000004	12
GGAACTA	30	2.161878E-6	45.000004	8
TATTACG	20	7.0276705E-4	45.000004	1
GTGTACG	20	7.0276705E-4	45.000004	1
CGAATAT	30	2.161878E-6	45.000004	14
AATTCGC	55	1.8189894E-12	45.000004	13
TCGTAAG	20	7.0276705E-4	45.000004	1
TGCTACG	20	7.0276705E-4	45.000004	1
ACCCGCT	120	0.0	45.000004	34
TTGCACG	20	7.0276705E-4	45.000004	1
GCTAATT	20	7.0276705E-4	45.000004	20
CAATACG	20	7.0276705E-4	45.000004	1
ATCGCGG	40	6.7957444E-9	45.000004	2