SRR1545479_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545479_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	896943
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5119	0.5707163108469546	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2116	0.23591242698811407	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1065	0.11873664212776064	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1015	0.1131621518870207	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	35	1.2115197E-7	45.000004	1
TAAACGC	35	1.2115197E-7	45.000004	27
TTATACG	45	3.8380676E-10	45.000004	1
TTAAACG	45	3.8380676E-10	45.000004	1
GTACGAG	45	3.8380676E-10	45.000004	1
AATCCGG	40	6.8121153E-9	45.0	2
TCGTTAG	80	0.0	45.0	1
GTCGAAA	20	7.0324575E-4	45.0	10
ATTCGGT	25	3.8901184E-5	45.0	14
ACGGGTC	20	7.0324575E-4	45.0	5
GACCCGT	20	7.0324575E-4	45.0	32
GGACCTA	40	6.8121153E-9	45.0	8
ACGTACG	20	7.0324575E-4	45.0	1
CAATCTA	20	7.0324575E-4	45.0	18
CCGTTAT	25	3.8901184E-5	45.0	23
ACGACTG	20	7.0324575E-4	45.0	1
ATCGAAG	25	3.8901184E-5	45.0	1
ACGCGTA	20	7.0324575E-4	45.0	28
ATAGACG	30	2.1649666E-6	44.999996	1
CTAAGCG	30	2.1649666E-6	44.999996	1