SRR1545477_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545477_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1761973
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9572	0.5432546355704656	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3844	0.21816452351994045	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2620	0.14869694371026115	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2544	0.14438359725149022	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2466	0.13995674167538322	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGAC	45	3.8562575E-10	45.000004	9
TCTAACG	45	3.8562575E-10	45.000004	1
TAATACG	25	3.891655E-5	45.0	1
GATACGT	50	2.1827873E-11	45.0	9
CGTGCAC	55	1.8189894E-12	45.0	17
CTATACG	20	7.034313E-4	45.0	1
TGACGTA	20	7.034313E-4	45.0	14
ATCGTTC	25	3.891655E-5	45.0	10
CCCGTTC	20	7.034313E-4	45.0	18
CCCGTGC	20	7.034313E-4	45.0	17
TGCGCGA	20	7.034313E-4	45.0	15
TCTACGA	20	7.034313E-4	45.0	29
CATACGT	20	7.034313E-4	45.0	24
CGTAACG	25	3.891655E-5	45.0	32
TACTACC	20	7.034313E-4	45.0	39
CCACGAA	25	3.891655E-5	45.0	10
ATACCCG	20	7.034313E-4	45.0	43
TACACCG	25	3.891655E-5	45.0	45
AATACGG	125	0.0	43.199997	2
ACGTAAG	110	0.0	42.954544	1