SRR1545475_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545475_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1016912
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5917	0.5818595906037101	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4183	0.411343361077458	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCA	35	1.211738E-7	45.000004	37
TTAGCCG	35	1.211738E-7	45.000004	22
CATAGCG	35	1.211738E-7	45.000004	1
CGTCCTA	35	1.211738E-7	45.000004	42
TATCGTG	35	1.211738E-7	45.000004	1
AGCGTTG	25	3.890487E-5	45.0	1
CTAGACG	55	1.8189894E-12	45.0	1
TCGCATG	20	7.032904E-4	45.0	1
CGTATCT	20	7.032904E-4	45.0	44
ACGCATT	20	7.032904E-4	45.0	35
CGGCCTA	20	7.032904E-4	45.0	45
ATTACGC	25	3.890487E-5	45.0	18
AGCCACG	20	7.032904E-4	45.0	6
TAACGAC	25	3.890487E-5	45.0	23
CCGTACG	20	7.032904E-4	45.0	23
GCCGAAC	20	7.032904E-4	45.0	19
GTGTACG	50	2.1827873E-11	45.0	1
CTACCGC	20	7.032904E-4	45.0	25
GCGATAC	20	7.032904E-4	45.0	9
TATAGCG	50	2.1827873E-11	45.0	1