FastQCFastQC Report
Thu 26 May 2016
SRR1545475_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545475_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1016912
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59170.5818595906037101No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC41830.411343361077458No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCGCA351.211738E-745.00000437
TTAGCCG351.211738E-745.00000422
CATAGCG351.211738E-745.0000041
CGTCCTA351.211738E-745.00000442
TATCGTG351.211738E-745.0000041
AGCGTTG253.890487E-545.01
CTAGACG551.8189894E-1245.01
TCGCATG207.032904E-445.01
CGTATCT207.032904E-445.044
ACGCATT207.032904E-445.035
CGGCCTA207.032904E-445.045
ATTACGC253.890487E-545.018
AGCCACG207.032904E-445.06
TAACGAC253.890487E-545.023
CCGTACG207.032904E-445.023
GCCGAAC207.032904E-445.019
GTGTACG502.1827873E-1145.01
CTACCGC207.032904E-445.025
GCGATAC207.032904E-445.09
TATAGCG502.1827873E-1145.01