SRR1545474_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545474_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1439225
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7376	0.5124980458232729	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5889	0.4091785509562438	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGTG	30	2.1658852E-6	45.000004	1
TGTAACG	45	3.8562575E-10	45.000004	1
TACCGTA	30	2.1658852E-6	45.000004	44
CTATGCG	20	7.03388E-4	45.0	1
TCGTTGC	25	3.8912982E-5	45.0	12
CGCGATA	25	3.8912982E-5	45.0	11
ATCGTAC	25	3.8912982E-5	45.0	40
TAGTTCG	20	7.03388E-4	45.0	1
TAGCACG	40	6.8175723E-9	45.0	1
CCGTAGA	20	7.03388E-4	45.0	26
CTCGAGA	20	7.03388E-4	45.0	17
TTACGCC	20	7.03388E-4	45.0	24
TACGTTC	25	3.8912982E-5	45.0	31
TACGTAA	20	7.03388E-4	45.0	44
TACCGAA	20	7.03388E-4	45.0	9
ACGAACT	20	7.03388E-4	45.0	45
CGTTAGG	185	0.0	42.567566	2
CGTTTTT	7860	0.0	42.0229	1
TCTAGCG	65	0.0	41.538464	1
TCACGAC	60	3.6379788E-12	41.250004	25