SRR1545470_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545470_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	826864
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4960	0.5998568083747751	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3213	0.38857659784438553	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1196	0.14464289169682076	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGT	20	7.032136E-4	45.000004	14
CTATGCG	20	7.032136E-4	45.000004	1
ACACGCG	20	7.032136E-4	45.000004	36
CGAACAC	20	7.032136E-4	45.000004	15
TTGTGCG	20	7.032136E-4	45.000004	1
CCCTAGT	20	7.032136E-4	45.000004	26
TTCCGCG	20	7.032136E-4	45.000004	1
CGTTAGA	20	7.032136E-4	45.000004	13
ACGATAT	20	7.032136E-4	45.000004	30
CCGTAAG	30	2.1647593E-6	45.000004	1
CATAGAC	20	7.032136E-4	45.000004	17
GTCGTGA	20	7.032136E-4	45.000004	30
TCCGTCG	20	7.032136E-4	45.000004	26
TAGATTA	20	7.032136E-4	45.000004	44
ACGTCAC	20	7.032136E-4	45.000004	42
CATCGAA	20	7.032136E-4	45.000004	9
CACGTCG	20	7.032136E-4	45.000004	28
TCGGTAC	40	6.8102963E-9	45.000004	36
TACAAGT	30	2.1647593E-6	45.000004	45
GGTAATC	25	3.889852E-5	45.0	8