SRR1545467_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545467_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1090137
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6030	0.5531414858866363	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2608	0.23923598593571269	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1806	0.16566725099689306	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACCGT	25	3.890672E-5	45.000004	38
CGTCTAC	25	3.890672E-5	45.000004	44
CGTTCAC	45	3.8562575E-10	45.000004	21
CGTAGCG	25	3.890672E-5	45.000004	23
TTAACGA	25	3.890672E-5	45.000004	45
CACCGTA	25	3.890672E-5	45.000004	39
ACCGGAT	20	7.033126E-4	45.0	21
CGTATCC	20	7.033126E-4	45.0	16
CGACGTC	20	7.033126E-4	45.0	18
TCTACCG	20	7.033126E-4	45.0	45
CTATTAG	20	7.033126E-4	45.0	1
TCATACC	40	6.8139343E-9	45.0	37
CGCACGG	20	7.033126E-4	45.0	2
TCTAGCG	55	1.8189894E-12	44.999996	1
GTGACGG	105	0.0	42.85714	2
GCTACGA	190	0.0	42.63158	10
CGGGTAT	175	0.0	42.428574	6
TCGATAG	85	0.0	42.352943	1
CGGGCAC	75	0.0	42.0	6
TGCGATG	70	0.0	41.785713	1