SRR1545464_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545464_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1258260
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8839	0.7024780252094162	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3365	0.26743280403096337	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1780	0.14146519797180235	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	55	1.8189894E-12	45.000004	6
TATATCG	20	7.033542E-4	45.0	42
CGCGATC	20	7.033542E-4	45.0	19
CGTTAGA	20	7.033542E-4	45.0	27
CTCGACT	20	7.033542E-4	45.0	14
CGCACGT	20	7.033542E-4	45.0	29
TATCGGC	20	7.033542E-4	45.0	11
TCGAATC	20	7.033542E-4	45.0	20
GACGCAT	30	2.165667E-6	44.999996	10
CCCGAGT	60	0.0	44.999996	45
CGTTTTT	6575	0.0	41.71483	1
ACGTTAG	65	0.0	41.538464	1
CGTTAGG	255	0.0	41.47059	2
TACGGGA	370	0.0	41.351353	4
AGTACGG	105	0.0	40.714287	2
AAATGCG	50	1.0822987E-9	40.5	1
CGGGTAT	145	0.0	40.344826	6
CGTATGA	95	0.0	40.263157	15
GCGATAT	95	0.0	40.263157	9
GGTTAAC	320	0.0	40.078125	8