SRR1545460_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545460_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1109075
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6942	0.6259270112481121	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2885	0.26012668214503076	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1654	0.14913328674796564	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1260	0.11360818700268242	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTTCGA	30	2.1654323E-6	45.000004	27
ATGTCGC	20	7.033179E-4	45.0	25
CGTCGAA	25	3.8907165E-5	45.0	27
ACCCGTA	25	3.8907165E-5	45.0	33
CCTATAC	20	7.033179E-4	45.0	28
TGTCGTT	20	7.033179E-4	45.0	28
TCGAATC	20	7.033179E-4	45.0	30
CATACGA	290	0.0	44.224136	18
ATACGAA	290	0.0	44.224136	19
CGCATCG	65	0.0	41.538464	21
ACGGGTA	170	0.0	41.02941	5
CGGTCTA	55	6.184564E-11	40.909092	31
TACGAAA	310	0.0	40.645164	20
GTTGATC	295	0.0	40.42373	16
CGTAAGG	195	0.0	40.384617	2
CGTTTTT	5420	0.0	40.226017	1
GCGTAAG	90	0.0	40.0	1
GGCCTAT	175	0.0	39.857143	8
CGGGATA	130	0.0	39.807693	6
ACGGGCT	165	0.0	39.545452	5