SRR1545459_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545459_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1269621
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8233	0.6484612337067519	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3349	0.26377950585253396	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1902	0.14980848615452957	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1533	0.12074469467660033	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1528	0.12035087636389127	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATC	20	7.033566E-4	45.0	9
ATAATCG	20	7.033566E-4	45.0	44
CGACACT	20	7.033566E-4	45.0	18
TCGATAG	40	6.8157533E-9	45.0	1
ATTCACG	20	7.033566E-4	45.0	39
CGTAGCA	20	7.033566E-4	45.0	28
TCATCGG	50	2.1827873E-11	45.0	44
CTCGAGG	25	3.8910373E-5	45.0	2
TATAGCG	35	1.2120654E-7	45.0	1
TACTAGC	35	1.2120654E-7	45.0	36
TTACGAC	25	3.8910373E-5	45.0	14
ATAACGG	50	2.1827873E-11	45.0	2
ACCGTCC	20	7.033566E-4	45.0	27
ACTCGAC	30	2.1656815E-6	44.999996	34
ACGTAAG	60	0.0	44.999996	1
GGCCTAT	440	0.0	41.931816	8
ACGTATG	70	0.0	41.785713	1
TCGATGG	125	0.0	41.399998	2
GTCGATG	60	3.6379788E-12	41.249996	1
CGTTGAT	445	0.0	40.95506	25