SRR1545458_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545458_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1342939
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9374	0.6980212801921755	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5320	0.39614606471328934	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1813	0.13500240889571305	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTTAG	75	0.0	45.000004	1
TATAGTC	30	2.165776E-6	45.000004	26
ACGTAAA	30	2.165776E-6	45.000004	29
TTCGATC	30	2.165776E-6	45.000004	21
TATCGGA	30	2.165776E-6	45.000004	36
ATCGCAC	30	2.165776E-6	45.000004	22
CGGTTGA	35	1.2121382E-7	45.0	31
CGACACG	20	7.033712E-4	45.0	41
CCGTACC	20	7.033712E-4	45.0	15
ATTCACG	40	6.8157533E-9	45.0	1
TACTATC	20	7.033712E-4	45.0	40
CTCGAAT	20	7.033712E-4	45.0	35
GCTACGA	110	0.0	45.0	10
GATCTCG	35	1.2121382E-7	45.0	10
GTCCACT	20	7.033712E-4	45.0	45
CGGTAAT	20	7.033712E-4	45.0	6
TCGAATA	20	7.033712E-4	45.0	36
AATCGTC	20	7.033712E-4	45.0	20
GTTTCGA	25	3.891159E-5	44.999996	24
ATCCGTG	25	3.891159E-5	44.999996	1