SRR1545454_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545454_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1054068
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5374	0.5098342801413192	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4448	0.4219841604146981	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1312	0.12447014803599009	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTG	35	1.2117926E-7	45.000004	1
CGGAACG	20	7.0330186E-4	45.000004	34
GCGTTAG	80	0.0	45.000004	1
ACGGGTA	45	3.8562575E-10	45.000004	5
TAGCACG	20	7.0330186E-4	45.000004	1
GTTCGCC	35	1.2117926E-7	45.000004	10
TGCGAAT	20	7.0330186E-4	45.000004	43
CGTGTAC	35	1.2117926E-7	45.000004	18
GTATACG	45	3.8562575E-10	45.000004	1
CGACTTA	45	3.8562575E-10	45.000004	33
TAGTCGT	20	7.0330186E-4	45.000004	38
TACGTGA	40	6.8139343E-9	45.000004	27
ACGCGAT	25	3.8905848E-5	45.0	22
AACGTTG	25	3.8905848E-5	45.0	1
CAAGTAC	55	1.8189894E-12	45.0	26
CGCGATT	25	3.8905848E-5	45.0	23
CCGCTTG	25	3.8905848E-5	45.0	39
TCCTATC	25	3.8905848E-5	45.0	22
ATCACGC	25	3.8905848E-5	45.0	33
ACGGGAT	195	0.0	45.0	5