##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545454_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1054068 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.950780215318176 31.0 31.0 33.0 30.0 34.0 2 31.226319364595074 31.0 31.0 34.0 28.0 34.0 3 31.335048592690416 31.0 31.0 34.0 28.0 34.0 4 35.16250564479711 35.0 35.0 37.0 32.0 37.0 5 35.03044964840978 37.0 35.0 37.0 32.0 37.0 6 35.0902958822391 37.0 35.0 37.0 32.0 37.0 7 35.56418466360804 37.0 35.0 37.0 35.0 37.0 8 35.48057905182588 37.0 35.0 37.0 35.0 37.0 9 37.19491816467249 39.0 37.0 39.0 34.0 39.0 10 36.63594189369187 39.0 35.0 39.0 32.0 39.0 11 36.292157621709414 38.0 35.0 39.0 32.0 39.0 12 35.22624251945795 37.0 35.0 39.0 30.0 39.0 13 34.62206233373938 37.0 33.0 39.0 27.0 39.0 14 35.55161716321907 37.0 33.0 40.0 27.0 41.0 15 36.00030263702152 37.0 34.0 40.0 30.0 41.0 16 36.1588094885719 37.0 34.0 40.0 31.0 41.0 17 36.111572498169 37.0 34.0 40.0 31.0 41.0 18 36.06351677500882 37.0 35.0 40.0 31.0 41.0 19 35.95112649278794 37.0 34.0 40.0 30.0 41.0 20 35.777526687082805 36.0 34.0 40.0 30.0 41.0 21 35.589239024427265 36.0 34.0 40.0 30.0 41.0 22 35.45867534162881 35.0 34.0 40.0 30.0 41.0 23 35.43716534417134 35.0 34.0 40.0 30.0 41.0 24 35.31199315414186 35.0 34.0 40.0 29.0 41.0 25 35.186195767256 35.0 34.0 40.0 29.0 41.0 26 35.03110804995503 35.0 34.0 40.0 29.0 41.0 27 34.914234186029745 35.0 34.0 40.0 29.0 41.0 28 34.999748593069896 36.0 34.0 40.0 29.0 41.0 29 35.10688779092051 36.0 34.0 40.0 29.0 41.0 30 35.03030070166251 36.0 34.0 40.0 29.0 41.0 31 34.83646311243677 35.0 34.0 40.0 28.0 41.0 32 34.544366207872734 35.0 33.0 40.0 27.0 41.0 33 34.29825400258807 35.0 33.0 40.0 25.0 41.0 34 34.1371088013297 35.0 33.0 40.0 24.0 41.0 35 33.967818964241395 35.0 33.0 40.0 23.0 41.0 36 33.7242938785733 35.0 33.0 40.0 23.0 41.0 37 33.65548996838913 35.0 33.0 40.0 23.0 41.0 38 33.67997415726499 35.0 33.0 40.0 23.0 41.0 39 33.644408140651265 35.0 33.0 40.0 23.0 41.0 40 33.437654876155996 35.0 32.0 39.0 23.0 41.0 41 33.442755116368204 35.0 32.0 39.0 23.0 41.0 42 33.40848977485324 35.0 32.0 39.0 23.0 41.0 43 33.28323694486504 35.0 32.0 39.0 23.0 41.0 44 33.229501322495324 35.0 32.0 39.0 23.0 41.0 45 33.180125950128456 35.0 32.0 39.0 23.0 41.0 46 33.14705123388624 35.0 32.0 39.0 23.0 41.0 47 33.070033432378175 35.0 32.0 39.0 23.0 41.0 48 33.05372328919956 35.0 32.0 39.0 23.0 40.0 49 33.08992588713441 35.0 32.0 39.0 22.0 40.0 50 32.94871583237514 35.0 32.0 39.0 22.0 40.0 51 32.764556935605675 35.0 32.0 38.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 4.0 12 4.0 13 8.0 14 12.0 15 53.0 16 146.0 17 363.0 18 812.0 19 1606.0 20 2818.0 21 4303.0 22 6282.0 23 9023.0 24 12689.0 25 17188.0 26 22295.0 27 25880.0 28 28193.0 29 31151.0 30 36368.0 31 44276.0 32 54516.0 33 69347.0 34 117482.0 35 157550.0 36 70981.0 37 82870.0 38 109843.0 39 147938.0 40 66.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.513113005992025 23.071851151918093 27.148153629557108 16.266882212532778 2 30.963941605285427 25.946713115282883 29.680722685822925 13.408622593608763 3 29.090058705889945 24.715293510475604 32.49135729383683 13.703290489797624 4 26.13616958298706 28.031113742187415 31.124367687853155 14.708348986972378 5 22.84672336130117 31.637807048501614 31.00511541949855 14.510354170698664 6 21.67858240644816 39.87731341810965 28.238880224046266 10.205223951395926 7 84.5306944144021 5.450976597335276 8.247380624399945 1.7709483638626728 8 86.33266544473412 4.053913030278881 7.809837695480747 1.8035838295062556 9 81.699093417123 5.5748775221332965 9.820334171988904 2.9056948887548053 10 54.594580235810206 19.90640072556989 14.6265705817841 10.872448456835802 11 49.85503781539711 19.850332236629896 18.457348102778948 11.837281845194047 12 44.30530098627413 20.670582922543897 23.748847322943114 11.275268768238861 13 20.722097625580133 43.089819632129995 23.401431406702415 12.786651335587457 14 14.565094472083395 45.31614658636825 27.2005221674503 12.918236774098066 15 13.835065669387554 22.09705635689538 51.470967717452766 12.596910256264302 16 15.189342623056575 17.01199543103481 50.17769252078613 17.620969425122478 17 15.786268058607225 17.380472607080378 29.527317023190154 37.305942311122244 18 21.586747724055755 21.83673159606401 36.54546006519504 20.0310606146852 19 31.22625864744969 21.62184982373054 27.26664693359442 19.885244595225355 20 32.74950003225599 20.978817305904364 25.97621785311763 20.29546480872202 21 22.244485175529473 27.48788503208522 30.001669721498043 20.265960070887267 22 23.366708789186276 24.680476022419807 25.306147231487913 26.646667956906008 23 19.647688763912765 31.131388107788112 25.334608393386386 23.886314734912737 24 19.007881844435083 22.820539092354572 41.93856563333675 16.233013429873594 25 17.075274080989082 24.062773938683275 39.262836932721605 19.599115047606038 26 15.929427702956545 34.893099875909336 29.296971352891845 19.880501068242275 27 18.04987913493247 34.82507769897198 29.056854017008387 18.068189149087154 28 14.508456759905433 29.10296109928392 40.08327735971493 16.305304781095717 29 14.827980737485627 24.452122633454387 39.74819461363024 20.971702015429745 30 16.773870376484247 31.35680051002402 33.31739508267019 18.551934030821542 31 29.513560794939224 26.305703237362295 25.774523085797117 18.406212881901357 32 31.54189293290376 25.951646383345288 27.35231503090882 15.154145652842132 33 28.981242196898112 27.28410311289215 25.270191296956174 18.464463393253567 34 19.615717392046815 27.12785133406953 29.184075410694565 24.07235586318909 35 20.614419563064242 24.82154851489657 31.570638706421217 22.993393215617967 36 31.8593297586114 24.79100020112554 25.011479335299054 18.338190704964006 37 20.32762592166729 34.538663539733676 28.166209390665497 16.967501147933532 38 20.77124056512483 35.39135995021194 23.439284752027383 20.398114732635843 39 20.934892246041052 33.16066895114926 26.481023994656894 19.423414808152796 40 24.733983006788936 26.301718674696513 25.403199793561704 23.56109852495285 41 17.30780177369961 25.384225685629392 26.49003669592474 30.81793584474626 42 21.64670590512187 26.274870311972283 24.4636968392931 27.614726943612744 43 22.079315565978668 27.06466755465492 25.371892515473387 25.48412436389303 44 19.713434047898236 30.40951817150317 28.963880888140043 20.913166892458552 45 16.869215268844133 38.346861872289075 22.8473874550788 21.93653540378799 46 20.712041348376005 35.294781740836456 25.400353677371857 18.592823233415682 47 22.596265136594603 27.579909455556944 26.78508407427225 23.0387413335762 48 23.360542204108274 24.148916388695984 31.27179650648725 21.218744900708494 49 21.038396004811837 25.09268851724936 33.44129600746821 20.427619470470596 50 19.4021638072686 35.15228619026477 26.492598200495603 18.95295180197103 51 18.824781702888238 35.62692350019164 23.96809314010102 21.580201656819103 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 595.0 1 1185.0 2 1775.0 3 5945.5 4 10116.0 5 7721.5 6 5327.0 7 5549.5 8 5772.0 9 6278.5 10 6785.0 11 6956.5 12 7128.0 13 6920.5 14 6713.0 15 6384.0 16 6055.0 17 5685.5 18 5316.0 19 4968.5 20 4621.0 21 4751.5 22 4882.0 23 4447.0 24 4012.0 25 5101.5 26 7317.0 27 8443.0 28 10316.0 29 12189.0 30 13764.0 31 15339.0 32 17295.0 33 19251.0 34 21211.0 35 23171.0 36 24294.5 37 25418.0 38 31356.0 39 37294.0 40 57652.0 41 78010.0 42 95498.5 43 112987.0 44 111705.5 45 110424.0 46 105114.0 47 99804.0 48 89325.5 49 78847.0 50 75740.0 51 72633.0 52 69361.0 53 66089.0 54 60367.5 55 54646.0 56 48809.5 57 42973.0 58 40202.5 59 37432.0 60 34240.5 61 31049.0 62 25991.0 63 20933.0 64 17814.0 65 14695.0 66 11111.0 67 7527.0 68 5775.0 69 4023.0 70 3037.5 71 2052.0 72 1824.0 73 1596.0 74 1239.5 75 709.5 76 536.0 77 409.0 78 282.0 79 209.5 80 137.0 81 98.5 82 60.0 83 47.0 84 34.0 85 21.0 86 8.0 87 5.5 88 3.0 89 3.0 90 3.0 91 3.5 92 4.0 93 4.0 94 4.0 95 2.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1054068.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.825412316888826 #Duplication Level Percentage of deduplicated Percentage of total 1 82.32797788033541 14.675301509326818 2 5.265575195738498 1.8772209789924266 3 1.775330179976569 0.9493797737009637 4 0.9269922133641716 0.6609607367104696 5 0.5738725429658816 0.511475734785417 6 0.4539229241473413 0.4854817969808527 7 0.3869014575705349 0.4827674605040037 8 0.3103170761543869 0.442522386513867 9 0.26964280081736436 0.4325844692565223 >10 4.269246077386233 18.853085523684076 >50 2.174846644200251 28.303341957448698 >100 1.2600471125755965 30.791321372313813 >500 0.003196736860656904 0.37903293677622696 >1k 0.001598368430328452 0.6451442594640214 >5k 5.327894767761508E-4 0.51037910354183 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5374 0.5098342801413192 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4448 0.4219841604146981 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1312 0.12447014803599009 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009487053966157781 0.0 2 0.0 0.0 0.0 0.03510209967478379 0.0 3 0.0 0.0 0.0 0.04753014037045048 0.0 4 0.0 0.0 0.0 0.07760410144317065 0.0 5 0.0 0.0 0.0 0.12560859451192902 0.0 6 0.0 0.0 0.0 0.18651548097466197 0.0 7 0.0 0.0 0.0 0.22256628604606155 0.0 8 0.0 0.0 0.0 0.3261649153565045 0.0 9 0.0 0.0 0.0 0.3683823055059066 0.0 10 0.0 0.0 0.0 0.4354557770466422 0.0 11 0.0 0.0 0.0 0.4963626635093751 0.0 12 0.0 0.0 0.0 0.5485414603232429 0.0 13 0.0 0.0 0.0 0.5699822022867594 0.0 14 0.0 0.0 0.0 0.5782359392373168 0.0 15 0.0 0.0 0.0 0.5913280737106145 0.0 16 0.0 0.0 0.0 0.6236789277352125 0.0 17 0.0 0.0 0.0 0.65659900499778 0.0 18 0.0 0.0 0.0 0.7111495653031873 0.0 19 0.0 0.0 0.0 0.7326851778063654 0.0 20 0.0 0.0 0.0 0.7578258708166835 0.0 21 0.0 0.0 0.0 0.7927382294121442 0.0 22 0.0 0.0 0.0 0.827176235309297 0.0 23 0.0 0.0 0.0 0.8664526387291901 0.0 24 0.0 0.0 0.0 0.894818930088002 0.0 25 0.0 0.0 0.0 0.9172083774481343 0.0 26 0.0 0.0 0.0 0.9414952356014982 0.0 27 0.0 0.0 0.0 0.965592352675539 0.0 28 0.0 0.0 0.0 0.9914920100031497 0.0 29 0.0 0.0 0.0 1.0209967478379005 0.0 30 0.0 0.0 0.0 1.0601782807181321 0.0 31 0.0 0.0 0.0 1.0993598135983638 0.0 32 0.0 0.0 0.0 1.1366439356853637 0.0 33 0.0 0.0 0.0 1.1725998702171017 0.0 34 0.0 0.0 0.0 1.2142480371285345 0.0 35 0.0 0.0 0.0 1.2640550704508628 0.0 36 0.0 0.0 0.0 1.3106365054246976 0.0 37 0.0 0.0 0.0 1.3536128598913921 0.0 38 0.0 0.0 0.0 1.4005737770238733 0.0 39 0.0 0.0 0.0 1.4434552609509064 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTG 35 1.2117926E-7 45.000004 1 CGGAACG 20 7.0330186E-4 45.000004 34 GCGTTAG 80 0.0 45.000004 1 ACGGGTA 45 3.8562575E-10 45.000004 5 TAGCACG 20 7.0330186E-4 45.000004 1 GTTCGCC 35 1.2117926E-7 45.000004 10 TGCGAAT 20 7.0330186E-4 45.000004 43 CGTGTAC 35 1.2117926E-7 45.000004 18 GTATACG 45 3.8562575E-10 45.000004 1 CGACTTA 45 3.8562575E-10 45.000004 33 TAGTCGT 20 7.0330186E-4 45.000004 38 TACGTGA 40 6.8139343E-9 45.000004 27 ACGCGAT 25 3.8905848E-5 45.0 22 AACGTTG 25 3.8905848E-5 45.0 1 CAAGTAC 55 1.8189894E-12 45.0 26 CGCGATT 25 3.8905848E-5 45.0 23 CCGCTTG 25 3.8905848E-5 45.0 39 TCCTATC 25 3.8905848E-5 45.0 22 ATCACGC 25 3.8905848E-5 45.0 33 ACGGGAT 195 0.0 45.0 5 >>END_MODULE