SRR1545452_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545452_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1227410
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6872	0.5598781173365053	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5722	0.46618489339340563	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1702	0.13866597143578754	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCCG	20	7.033473E-4	45.000004	44
ATCTCGC	40	6.8157533E-9	45.000004	10
ATCTCGA	20	7.033473E-4	45.000004	17
GCGACAA	40	6.8157533E-9	45.000004	36
CGTTGCT	20	7.033473E-4	45.000004	45
CGGCACT	20	7.033473E-4	45.000004	22
CGGCACG	20	7.033473E-4	45.000004	26
ACCGAGT	20	7.033473E-4	45.000004	18
GTTAGTC	20	7.033473E-4	45.000004	41
TCGATTG	20	7.033473E-4	45.000004	1
TAACCGA	20	7.033473E-4	45.000004	16
CGCTAAC	20	7.033473E-4	45.000004	41
TCTAACG	20	7.033473E-4	45.000004	1
CCGAGTC	20	7.033473E-4	45.000004	19
GCGATAT	95	0.0	45.000004	9
CTCGACA	20	7.033473E-4	45.000004	29
TATAGCG	55	1.8189894E-12	45.000004	1
CATCGAT	20	7.033473E-4	45.000004	34
CCGCGTG	20	7.033473E-4	45.000004	40
CGCCGAT	20	7.033473E-4	45.000004	11