##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545452_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1227410 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.957919521594253 31.0 31.0 33.0 28.0 34.0 2 31.249086287385634 31.0 31.0 34.0 28.0 34.0 3 31.324597322817965 31.0 31.0 34.0 28.0 34.0 4 35.141625862588704 35.0 35.0 37.0 32.0 37.0 5 35.00845846131285 35.0 35.0 37.0 32.0 37.0 6 35.051210272036236 37.0 35.0 37.0 32.0 37.0 7 35.59027138445996 37.0 35.0 37.0 35.0 37.0 8 35.54962074612395 37.0 35.0 37.0 35.0 37.0 9 37.273162187044264 39.0 37.0 39.0 34.0 39.0 10 36.65610757611556 39.0 35.0 39.0 32.0 39.0 11 36.25710072428936 38.0 35.0 39.0 32.0 39.0 12 34.978720232033304 35.0 34.0 39.0 30.0 39.0 13 34.25484801329629 35.0 33.0 39.0 25.0 39.0 14 35.116607327624834 36.0 33.0 40.0 25.0 41.0 15 35.669343577125815 36.0 33.0 40.0 30.0 41.0 16 35.903156239561355 36.0 34.0 40.0 31.0 41.0 17 35.85442191280827 36.0 34.0 40.0 31.0 41.0 18 35.8037672823262 36.0 34.0 40.0 30.0 41.0 19 35.66367310026804 36.0 34.0 40.0 30.0 41.0 20 35.47962864894371 35.0 34.0 40.0 30.0 41.0 21 35.269495930455186 35.0 34.0 40.0 29.0 41.0 22 35.10853423061569 35.0 34.0 40.0 29.0 41.0 23 35.1300413064909 35.0 34.0 40.0 29.0 41.0 24 35.011735279979796 35.0 34.0 39.0 29.0 41.0 25 34.89978735711783 35.0 34.0 39.0 29.0 41.0 26 34.76086556244449 35.0 34.0 39.0 29.0 41.0 27 34.6017997246234 35.0 33.0 39.0 27.0 41.0 28 34.68951369143155 35.0 34.0 39.0 28.0 41.0 29 34.810148198238565 35.0 34.0 39.0 29.0 41.0 30 34.72015463455569 35.0 34.0 39.0 29.0 41.0 31 34.48394179613984 35.0 33.0 39.0 27.0 41.0 32 34.186339527949094 35.0 33.0 39.0 25.0 41.0 33 33.89445091697151 35.0 33.0 39.0 24.0 41.0 34 33.73118680799407 35.0 33.0 39.0 23.0 41.0 35 33.51450452579008 35.0 33.0 39.0 23.0 41.0 36 33.24644821208887 35.0 33.0 39.0 21.0 41.0 37 33.18788098516388 35.0 32.0 39.0 22.0 41.0 38 33.220773009833714 35.0 32.0 39.0 23.0 41.0 39 33.188006452611596 35.0 32.0 39.0 22.0 41.0 40 33.0059515565296 35.0 32.0 39.0 21.0 41.0 41 33.02734131219397 35.0 32.0 39.0 21.0 41.0 42 32.99340807065284 35.0 32.0 39.0 22.0 41.0 43 32.84751875901288 35.0 32.0 38.0 21.0 41.0 44 32.79219168818895 35.0 32.0 38.0 21.0 41.0 45 32.750183720191295 35.0 32.0 38.0 21.0 40.0 46 32.69405251708883 35.0 32.0 38.0 21.0 40.0 47 32.622674574917916 35.0 32.0 38.0 20.0 40.0 48 32.628882769408754 35.0 32.0 38.0 20.0 40.0 49 32.6834505177569 35.0 32.0 38.0 20.0 40.0 50 32.549896122729976 35.0 32.0 38.0 20.0 40.0 51 32.34650279857586 35.0 31.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 1.0 13 6.0 14 16.0 15 55.0 16 192.0 17 482.0 18 1077.0 19 2168.0 20 3556.0 21 5675.0 22 8316.0 23 11567.0 24 16333.0 25 22106.0 26 28770.0 27 32886.0 28 35041.0 29 38100.0 30 44450.0 31 52973.0 32 65597.0 33 84408.0 34 145718.0 35 200483.0 36 76882.0 37 85238.0 38 112401.0 39 152842.0 40 67.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.661800050512866 22.858458053951004 29.469696352482057 17.010045543054073 2 31.37989750776024 26.3281218174856 29.026323722309577 13.26565695244458 3 28.13151269746865 25.07059580743191 33.24422971949063 13.553661775608802 4 24.362926813371246 28.054847198572602 32.40099070400274 15.181235284053413 5 22.548537163620956 31.51049771470006 32.12129606244042 13.81966905923856 6 20.74693867574812 40.131985237206806 29.047180648682996 10.07389543836208 7 84.15875705754394 5.280061267221222 8.911040320675243 1.6501413545596013 8 86.87243871241068 3.531175401862458 8.186425073936174 1.4099608117906812 9 82.98229605429319 4.900644446435991 9.63101164240148 2.4860478568693427 10 58.23946358592483 17.85523989538948 14.20658133793924 9.698715180746449 11 54.388835026600724 16.92580311387393 19.16702650296152 9.51833535656382 12 47.504012514155825 19.437922128710046 22.172216292844283 10.885849064289847 13 20.56191492655266 46.13796530906543 21.438802030291427 11.861317734090484 14 13.105889637529433 47.179345125100824 28.040019227479 11.674746009890745 15 12.52996146356963 20.954937632901803 54.58917558110167 11.925925322426899 16 13.36399410140051 15.373347129321091 52.876137557947224 18.38652121133118 17 13.856413097497983 16.030992089033006 30.959907447389217 39.15268736607979 18 21.144605307110094 20.231137109849197 38.21355537269535 20.41070221034536 19 32.00951597265787 20.929762670990133 27.194498985669007 19.86622237068298 20 34.0722334020417 20.57935001344294 26.37790143472841 18.970515149786948 21 22.2505927114819 28.778403304519273 29.051987518433126 19.919016465565704 22 22.368890590756145 24.360727059417798 26.133810218264475 27.136572131561582 23 18.470682168142673 31.557996105620777 25.340269347650747 24.631052378585803 24 17.861105905932003 22.7051270561589 44.41710593852095 15.016661099388143 25 15.141639712891372 23.353728582951092 41.664236074335385 19.840395629822147 26 14.30614057242486 36.51347145615564 29.408755020734716 19.771632950684776 27 16.17250959337141 36.829665718871446 29.959345288045558 17.038479399711587 28 13.365786493510726 28.996178945910493 43.04494830578209 14.593086254796686 29 13.361305513235186 23.891120326541255 42.48181129369974 20.26576286652382 30 16.748519239699856 32.256784611499015 33.91515467529187 17.07954147350926 31 30.938235797329334 25.812320251586673 26.14008359065023 17.109360360433758 32 32.81210027619133 24.8429620094345 27.837234501918672 14.507703212455494 33 30.39994785768407 26.568220887885875 25.112472604916043 17.919358649514017 34 18.680147627931987 27.109767722276988 28.90517431013272 25.304910339658303 35 19.45340187875282 24.698104137981602 33.680840143065474 22.167653840200096 36 32.968690168729275 23.853805981701306 26.087615385242096 17.089888464327323 37 19.820842261347064 34.42207575300837 29.320438973122265 16.436643012522303 38 19.814813306067247 35.83749521349834 23.54926226770191 20.798429212732504 39 20.065014950179645 33.76679349198719 27.12239593941715 19.045795618416015 40 24.19444195501096 26.904131463814046 24.78185773294987 24.119568848225125 41 16.553718806266854 23.498342037298052 27.792913533375156 32.15502562305994 42 21.27227250877865 24.065063833600835 24.340358967256254 30.322304690364266 43 21.217115715205185 25.73663242111438 26.01575675609617 27.03049510758426 44 18.207119055572303 31.635965162415168 29.465052427469224 20.691863354543308 45 16.084193545758957 40.66986581500884 22.69755012587481 20.548390513357397 46 21.212390317823708 35.70070310654142 25.091941568017205 17.994965007617665 47 21.811456644479023 27.29267318988765 26.750637521284652 24.145232644348667 48 23.280810813012767 23.171311949552308 33.46925640169137 20.078620835743557 49 21.624477558436055 22.8415118012726 34.65223519443381 20.881775445857535 50 18.912262406204935 36.091444586568464 26.361281071524594 18.635011935702007 51 17.730994533204065 36.269706129166295 23.667723091713444 22.3315762459162 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 832.0 1 1388.5 2 1945.0 3 7022.5 4 12100.0 5 9354.0 6 6608.0 7 7119.5 8 7631.0 9 8435.0 10 9239.0 11 9505.0 12 9771.0 13 9142.5 14 8514.0 15 8096.0 16 7678.0 17 7253.5 18 6829.0 19 6439.0 20 6049.0 21 5636.0 22 5223.0 23 5267.5 24 5312.0 25 6273.5 26 7350.5 27 7466.0 28 9545.5 29 11625.0 30 13607.0 31 15589.0 32 17880.5 33 20172.0 34 22780.5 35 25389.0 36 26764.5 37 28140.0 38 36192.5 39 44245.0 40 68648.0 41 93051.0 42 117986.0 43 142921.0 44 146897.5 45 150874.0 46 137567.0 47 124260.0 48 109842.0 49 95424.0 50 87668.0 51 79912.0 52 75636.5 53 71361.0 54 62063.0 55 52765.0 56 48993.5 57 45222.0 58 43523.5 59 41825.0 60 34899.5 61 27974.0 62 25392.0 63 22810.0 64 18116.0 65 13422.0 66 10507.5 67 7593.0 68 5905.5 69 4218.0 70 3430.5 71 2643.0 72 2072.0 73 1501.0 74 1211.0 75 743.0 76 565.0 77 409.5 78 254.0 79 220.0 80 186.0 81 136.5 82 87.0 83 54.0 84 21.0 85 12.5 86 4.0 87 3.0 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1227410.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.506723133887874 #Duplication Level Percentage of deduplicated Percentage of total 1 83.05306392081019 14.53986995482716 2 5.886468644648823 2.061055535963583 3 1.9028661801680953 0.9993885413112494 4 0.9196160245977186 0.6439785252847554 5 0.5668913009675679 0.49622045265243575 6 0.3978696867664159 0.41792366697518013 7 0.34638362619738433 0.4244829569364803 8 0.26449229450418343 0.37043146967451784 9 0.2166665656467282 0.3413809419432851 >10 3.2690070920482714 14.06814049651269 >50 1.5216790871504804 19.727891569620446 >100 1.6498500277825643 44.26590006377592 >500 0.0032744400891630138 0.38194639385916396 >1k 9.355543111894326E-4 0.23003589630154192 >5k 9.355543111894326E-4 1.031353534361559 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6872 0.5598781173365053 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5722 0.46618489339340563 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1702 0.13866597143578754 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010021101343479359 0.0 2 0.0 0.0 0.0 0.03698845536536284 0.0 3 0.0 0.0 0.0 0.053690290937828435 0.0 4 0.0 0.0 0.0 0.0921452489388224 0.0 5 0.0 0.0 0.0 0.1443690372410197 0.0 6 0.0 0.0 0.0 0.22828557694657856 0.0 7 0.0 0.0 0.0 0.2762728020791749 0.0 8 0.0 0.0 0.0 0.42218981432447183 0.0 9 0.0 0.0 0.0 0.47922047237679344 0.0 10 0.0 0.0 0.0 0.5737284200063548 0.0 11 0.0 0.0 0.0 0.648845943898127 0.0 12 0.0 0.0 0.0 0.7253484980568841 0.0 13 8.147236864617365E-5 0.0 0.0 0.7572041941975379 0.0 14 8.147236864617365E-5 0.0 0.0 0.7696694666004025 0.0 15 8.147236864617365E-5 0.0 0.0 0.7871045534906836 0.0 16 8.147236864617365E-5 0.0 0.0 0.8260483457035547 0.0 17 8.147236864617365E-5 0.0 0.0 0.8683325050309187 0.0 18 8.147236864617365E-5 0.0 0.0 0.9412502749692442 0.0 19 8.147236864617365E-5 0.0 0.0 0.9652846237198655 0.0 20 8.147236864617365E-5 0.0 0.0 0.9957552895935343 0.0 21 8.147236864617365E-5 0.0 0.0 1.0352693883869286 0.0 22 8.147236864617365E-5 0.0 0.0 1.0718504819090606 0.0 23 8.147236864617365E-5 0.0 0.0 1.1212227373086419 0.0 24 8.147236864617365E-5 0.0 0.0 1.1530784334492956 0.0 25 8.147236864617365E-5 0.0 0.0 1.1817567072127488 0.0 26 8.147236864617365E-5 0.0 0.0 1.2142641823025722 0.0 27 8.147236864617365E-5 0.0 0.0 1.2445719034389486 0.0 28 1.629447372923473E-4 0.0 0.0 1.2740649008888636 0.0 29 1.629447372923473E-4 0.0 0.0 1.3064909036100407 0.0 30 1.629447372923473E-4 0.0 0.0 1.3567593550647299 0.0 31 1.629447372923473E-4 0.0 0.0 1.3993694038666786 0.0 32 1.629447372923473E-4 0.0 0.0 1.44043147766435 0.0 33 1.629447372923473E-4 0.0 0.0 1.4819823856738987 0.0 34 1.629447372923473E-4 0.0 0.0 1.525325685793663 0.0 35 1.629447372923473E-4 0.0 0.0 1.5916441938716483 0.0 36 1.629447372923473E-4 0.0 0.0 1.641179394008522 0.0 37 1.629447372923473E-4 0.0 0.0 1.6925069862556115 0.0 38 1.629447372923473E-4 0.0 0.0 1.739760960070392 0.0 39 1.629447372923473E-4 0.0 0.0 1.7900294115250812 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCCG 20 7.033473E-4 45.000004 44 ATCTCGC 40 6.8157533E-9 45.000004 10 ATCTCGA 20 7.033473E-4 45.000004 17 GCGACAA 40 6.8157533E-9 45.000004 36 CGTTGCT 20 7.033473E-4 45.000004 45 CGGCACT 20 7.033473E-4 45.000004 22 CGGCACG 20 7.033473E-4 45.000004 26 ACCGAGT 20 7.033473E-4 45.000004 18 GTTAGTC 20 7.033473E-4 45.000004 41 TCGATTG 20 7.033473E-4 45.000004 1 TAACCGA 20 7.033473E-4 45.000004 16 CGCTAAC 20 7.033473E-4 45.000004 41 TCTAACG 20 7.033473E-4 45.000004 1 CCGAGTC 20 7.033473E-4 45.000004 19 GCGATAT 95 0.0 45.000004 9 CTCGACA 20 7.033473E-4 45.000004 29 TATAGCG 55 1.8189894E-12 45.000004 1 CATCGAT 20 7.033473E-4 45.000004 34 CCGCGTG 20 7.033473E-4 45.000004 40 CGCCGAT 20 7.033473E-4 45.000004 11 >>END_MODULE