SRR1545444_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545444_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1110608
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7000	0.6302853932260527	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3164	0.28488899773817583	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	1569	0.1412739688530967	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAATT	25	3.8907197E-5	45.000004	34
ATTACGA	20	7.0331834E-4	45.0	13
TTATACG	20	7.0331834E-4	45.0	1
CGCCTAC	20	7.0331834E-4	45.0	14
CTACGCG	35	1.2118835E-7	45.0	1
GTGTCGA	20	7.0331834E-4	45.0	7
TCGTACC	20	7.0331834E-4	45.0	38
CACGTAA	30	2.165436E-6	44.999996	32
GTACGAG	80	0.0	42.1875	1
CGTTTTT	5750	0.0	41.673912	1
CGGTCTA	60	3.6379788E-12	41.249996	31
ATGTACG	55	6.184564E-11	40.909092	1
GTCGACG	45	1.9281288E-8	40.0	1
CGGGCTA	45	1.9281288E-8	40.0	6
TACGGGA	205	0.0	39.512196	4
CGCATCG	40	3.4580808E-7	39.375	21
TATTGCG	80	0.0	39.375	1
ATACTAT	605	0.0	39.049583	45
GCGCGAC	225	0.0	39.000004	9
ATGGTCC	470	0.0	38.776596	11