##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545442_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1493043 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.87250601623664 31.0 31.0 33.0 28.0 34.0 2 31.166012633259726 31.0 31.0 34.0 28.0 34.0 3 31.260788872122237 31.0 31.0 34.0 28.0 34.0 4 35.113323594832835 35.0 35.0 37.0 32.0 37.0 5 34.971726199446366 35.0 35.0 37.0 32.0 37.0 6 35.021144735952014 37.0 35.0 37.0 32.0 37.0 7 35.50762704088228 37.0 35.0 37.0 35.0 37.0 8 35.416380506120724 37.0 35.0 37.0 35.0 37.0 9 37.087554075803574 39.0 37.0 39.0 33.0 39.0 10 36.48416489009359 38.0 35.0 39.0 32.0 39.0 11 36.1956320079194 38.0 35.0 39.0 31.0 39.0 12 35.630128536150664 37.0 35.0 39.0 30.0 39.0 13 35.261486105892466 37.0 35.0 39.0 30.0 39.0 14 36.3065176287622 38.0 35.0 40.0 30.0 41.0 15 36.58390079857044 38.0 35.0 40.0 31.0 41.0 16 36.62231429369415 38.0 35.0 40.0 31.0 41.0 17 36.53361691525294 38.0 35.0 40.0 31.0 41.0 18 36.458250030307234 38.0 35.0 40.0 31.0 41.0 19 36.36641811387884 38.0 35.0 40.0 30.0 41.0 20 36.21126786033624 38.0 34.0 40.0 30.0 41.0 21 36.05193018553384 38.0 34.0 40.0 30.0 41.0 22 35.95031355426468 37.0 34.0 40.0 30.0 41.0 23 35.86254113243892 37.0 34.0 40.0 30.0 41.0 24 35.742200994880925 37.0 34.0 40.0 29.0 41.0 25 35.619094694526545 37.0 34.0 40.0 29.0 41.0 26 35.446456666016985 37.0 34.0 40.0 29.0 41.0 27 35.36770809681972 37.0 34.0 40.0 29.0 41.0 28 35.37423235633535 37.0 34.0 40.0 28.0 41.0 29 35.376568524818104 37.0 34.0 40.0 29.0 41.0 30 35.23349695889536 37.0 34.0 40.0 27.0 41.0 31 35.098853817338146 37.0 34.0 40.0 27.0 41.0 32 34.89532853373948 37.0 34.0 40.0 26.0 41.0 33 34.62910914153176 37.0 33.0 40.0 25.0 41.0 34 34.43591845646777 36.0 33.0 40.0 24.0 41.0 35 34.25193246276229 36.0 33.0 40.0 23.0 41.0 36 34.0650617564263 36.0 33.0 40.0 23.0 41.0 37 34.02296718848687 36.0 33.0 40.0 23.0 41.0 38 33.973608261784825 36.0 33.0 40.0 23.0 41.0 39 33.900899036397476 36.0 33.0 40.0 23.0 41.0 40 33.73976369066396 36.0 33.0 40.0 22.0 41.0 41 33.659475313169146 36.0 33.0 40.0 22.0 41.0 42 33.611574482449605 36.0 32.0 40.0 22.0 41.0 43 33.53089093884101 35.0 32.0 40.0 21.0 41.0 44 33.45349129261515 35.0 32.0 40.0 21.0 41.0 45 33.40590525524047 35.0 32.0 40.0 21.0 41.0 46 33.32423178702824 35.0 32.0 40.0 21.0 41.0 47 33.22701891372184 35.0 32.0 39.0 21.0 41.0 48 33.16799851042468 35.0 32.0 39.0 20.0 41.0 49 33.17103593131611 35.0 32.0 39.0 20.0 41.0 50 33.101382210693195 35.0 32.0 39.0 20.0 41.0 51 32.92722781594368 35.0 31.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 6.0 12 4.0 13 13.0 14 22.0 15 79.0 16 221.0 17 644.0 18 1477.0 19 2567.0 20 4210.0 21 6504.0 22 9491.0 23 13056.0 24 18058.0 25 24452.0 26 31497.0 27 36044.0 28 39116.0 29 43084.0 30 49523.0 31 59576.0 32 71078.0 33 89924.0 34 134504.0 35 170255.0 36 118190.0 37 140338.0 38 185389.0 39 243634.0 40 85.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.01800417000716 22.850447040038365 26.895608498884492 17.23594029106998 2 33.460054398969085 25.287483347766944 28.28706206050328 12.96540019276069 3 28.679816991205207 25.15379664215967 32.72176353929525 13.44462282733987 4 26.86506684670167 27.845748581922958 30.766026162675825 14.52315840869955 5 23.02612851739702 31.997203027642207 30.582240431119533 14.394428023841243 6 21.7458572860929 40.087325013412205 28.12336952117253 10.043448179322363 7 83.35674190227608 5.029928809819944 9.422836448782789 2.1904928391211773 8 83.69718755588418 4.763225171679583 9.4257834503092 2.113803822127025 9 78.26117533118604 6.728272394030179 11.415344367174958 3.595207907608823 10 44.496642092692575 25.46195923359207 17.67135976659748 12.370038907117879 11 37.84251357797464 23.4999259900753 24.063071190849826 14.594489241100222 12 35.43320587551732 21.644922483813257 28.10990708238142 14.811964558288008 13 22.157164930949744 33.22529893646733 27.73744627582729 16.880089856755635 14 17.346854712154975 35.272728246942656 29.610332723170064 17.77008431773231 15 16.851088682643432 24.151481236642212 41.78339136917021 17.21403871154414 16 18.33476999657746 20.95123851088013 40.707802789336945 20.006188703205467 17 18.15915549652622 21.744249830714857 31.158312252225823 28.938282420533103 18 21.342519940818853 24.08055226808605 34.06218039266116 20.514747398433936 19 28.38163401857817 24.284029328023372 27.26324693930449 20.07108971409397 20 30.187543158502468 22.486358396911545 28.027926858101203 19.298171586484784 21 23.658193367505156 26.79949606273898 28.64900742979271 20.893303139963148 22 23.46275358445805 25.289224757759825 26.768083705559718 24.479937952222407 23 21.358661471906704 28.84645653206237 27.53785389972024 22.257028096310687 24 20.26873974828588 23.888394373102447 37.39537307364892 18.44749280496275 25 19.97651775601908 25.75739613661495 33.483764365795224 20.78232174157074 26 18.69242881819211 31.093143332107648 28.850877034351992 21.36355081534825 27 19.40185245836858 31.264069420639593 29.120661628633606 20.213416492358224 28 17.50324672497711 28.57178259433921 34.58935877935197 19.33561190133171 29 18.746211596049143 25.07643785209133 34.46491494216845 21.71243560969108 30 19.19073998538555 30.058410909799647 31.535461470299246 19.215387634515547 31 26.12617319126107 27.551383315818768 27.177984826960778 19.144458665959384 32 27.307384984893268 26.53855247303661 27.479449687651325 18.674612854418797 33 25.60441996647116 28.63802315137608 26.197571000969162 19.559985881183596 34 20.472417740145463 27.491572580294072 28.72743785677974 23.308571822780724 35 21.632732613863098 27.152734382064015 30.152246117492933 21.062286886579958 36 25.914792809048365 29.24021612237558 25.492099021930382 19.352892046645675 37 21.63655032038595 32.47495216145818 28.037705544984306 17.85079197317157 38 20.577572112792463 31.67624777049288 27.179257395801727 20.566922720912928 39 21.555976619561527 31.540350813740798 26.83244889798887 20.071223668708804 40 23.48820496127707 27.639927316225986 27.6087828682764 21.26308485422054 41 18.387548114823215 27.13826728366162 29.372764213756735 25.101420387758424 42 21.29295673332918 27.819761386644593 25.775212100388266 25.112069779637963 43 21.74277632995165 27.48721905531187 27.24777518129083 23.522229433445656 44 20.072027396397825 30.091966540816305 28.38679127124939 21.44921479153648 45 18.372143334116966 34.26773374912846 25.261228243258905 22.09889467349567 46 20.271418840582623 33.23869439795103 25.978086364558823 20.511800396907525 47 21.786780420925584 28.996820587216842 27.327344222503974 21.889054769353596 48 21.93392956532397 26.471508188310715 30.391422082284304 21.20314016408101 49 20.63477073332784 28.11586806274166 30.005096973094545 21.24426423083595 50 18.99951977270581 32.029753999047585 28.43715820642808 20.533568021818528 51 19.05738816631537 32.015219923337774 27.048316759798613 21.879075150548243 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1207.0 1 2064.0 2 2921.0 3 11929.5 4 20938.0 5 15341.5 6 9745.0 7 9816.0 8 9887.0 9 10078.5 10 10270.0 11 10278.0 12 10286.0 13 9890.5 14 9495.0 15 9373.0 16 9251.0 17 8771.5 18 8292.0 19 8277.0 20 8262.0 21 7972.0 22 7682.0 23 7822.0 24 7962.0 25 9499.0 26 12489.0 27 13942.0 28 17721.0 29 21500.0 30 25540.0 31 29580.0 32 32922.5 33 36265.0 34 42770.0 35 49275.0 36 49403.5 37 49532.0 38 57902.5 39 66273.0 40 77398.5 41 88524.0 42 104024.0 43 119524.0 44 120670.0 45 121816.0 46 115900.5 47 109985.0 48 102967.0 49 95949.0 50 95956.5 51 95964.0 52 89582.5 53 83201.0 54 78505.0 55 73809.0 56 72951.5 57 72094.0 58 69425.0 59 66756.0 60 61696.5 61 56637.0 62 49047.5 63 41458.0 64 34445.5 65 27433.0 66 22188.5 67 16944.0 68 14127.0 69 11310.0 70 9259.0 71 7208.0 72 5854.5 73 4501.0 74 3706.5 75 2253.5 76 1595.0 77 1273.0 78 951.0 79 717.5 80 484.0 81 350.0 82 216.0 83 158.5 84 101.0 85 71.0 86 41.0 87 26.0 88 11.0 89 8.5 90 6.0 91 5.5 92 5.0 93 5.0 94 5.0 95 3.0 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1493043.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.295862718537922 #Duplication Level Percentage of deduplicated Percentage of total 1 78.3776272008257 15.907415618727022 2 5.575672142838458 2.26326152749251 3 2.330561903109151 1.4190229332767341 4 1.4206703779303906 1.1533492383507438 5 0.9851026838713752 0.9996754417758346 6 0.7289757201788747 0.8877114685138654 7 0.6265122772297821 0.8900925019093961 8 0.5216056504170115 0.8469149339261878 9 0.4548726996891361 0.8308830480571289 >10 6.353324203757812 30.818170290336084 >50 2.2145232251814506 31.54150854703282 >100 0.4049051653312982 10.533877701778046 >500 0.003321617435033366 0.4818156586999208 >1k 0.0019929704610200196 0.6627577641918178 >5k 0.0 0.0 >10k+ 3.3216174350333657E-4 0.7635433259319019 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11326 0.7585849838216313 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2937 0.1967123518880568 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2315 0.15505246667376626 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00642982151217346 0.0 2 0.0 0.0 0.0 0.02270530721486253 0.0 3 0.0 0.0 0.0 0.03456029062793235 0.0 4 0.0 0.0 0.0 0.05204136786415395 0.0 5 0.0 0.0 0.0 0.08954866001849913 0.0 6 0.0 0.0 0.0 0.15110080553607633 0.0 7 0.0 0.0 0.0 0.19028253037588336 0.0 8 0.0 0.0 0.0 0.29637458532674543 0.0 9 0.0 0.0 0.0 0.34392847359386164 0.0 10 6.697730741847355E-5 0.0 0.0 0.40802575679334085 0.0 11 6.697730741847355E-5 0.0 0.0 0.46026805657975023 0.0 12 6.697730741847355E-5 0.0 0.0 0.5103001052213499 0.0 13 6.697730741847355E-5 0.0 0.0 0.5316658662878431 0.0 14 6.697730741847355E-5 0.0 0.0 0.5424492127822172 0.0 15 6.697730741847355E-5 0.0 0.0 0.5546390827323795 0.0 16 6.697730741847355E-5 0.0 0.0 0.5800904595513994 0.0 17 6.697730741847355E-5 0.0 0.0 0.6103642025045495 0.0 18 6.697730741847355E-5 0.0 0.0 0.6538324750191388 0.0 19 6.697730741847355E-5 0.0 0.0 0.6737917126298438 0.0 20 6.697730741847355E-5 0.0 0.0 0.6989751802191899 0.0 21 6.697730741847355E-5 0.0 0.0 0.7280433316388074 0.0 22 1.339546148369471E-4 0.0 0.0 0.7607282576590225 0.0 23 1.339546148369471E-4 0.0 0.0 0.7970299582798352 0.0 24 1.339546148369471E-4 0.0 0.0 0.826700905466219 0.0 25 1.339546148369471E-4 0.0 0.0 0.8518843730555651 0.0 26 1.339546148369471E-4 0.0 0.0 0.8769338860300742 0.0 27 1.339546148369471E-4 0.0 0.0 0.9029210813084418 0.0 28 1.339546148369471E-4 0.0 0.0 0.9325920284948257 0.0 29 1.339546148369471E-4 0.0 0.0 0.9642053175963452 0.0 30 1.339546148369471E-4 0.0 0.0 1.0097498866409071 0.0 31 1.339546148369471E-4 0.0 0.0 1.045381814187535 0.0 32 1.339546148369471E-4 0.0 0.0 1.0828221290344617 0.0 33 1.339546148369471E-4 0.0 0.0 1.123142468100383 0.0 34 1.339546148369471E-4 0.0 0.0 1.1631279206292116 0.0 35 1.339546148369471E-4 0.0 0.0 1.2128920600411375 0.0 36 1.339546148369471E-4 0.0 0.0 1.2587715156227919 0.0 37 1.339546148369471E-4 0.0 0.0 1.3039811981302616 0.0 38 2.0093192225542064E-4 0.0 0.0 1.349458789867405 0.0 39 2.679092296738942E-4 0.0 0.0 1.4012992258093036 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATAA 20 7.033966E-4 45.0 26 ACGTATA 20 7.033966E-4 45.0 42 GCGATCG 100 0.0 42.75 9 CGTTTTT 8785 0.0 41.28628 1 TAATGCG 55 6.184564E-11 40.909092 1 GGGCGAT 2925 0.0 39.692307 7 TACGGGC 160 0.0 39.375 4 TATCGCC 40 3.459154E-7 39.375 13 TACGGGA 390 0.0 39.23077 4 ATAGGGC 615 0.0 39.14634 4 GCGATAT 140 0.0 38.57143 9 TTATTCG 35 6.2495437E-6 38.57143 1 TAGGGCG 590 0.0 38.51695 5 TAGCATA 795 0.0 38.490566 30 TAAGGGC 655 0.0 38.47328 4 CGTATGG 135 0.0 38.333336 2 TAGCCGT 135 0.0 38.333336 44 AGGGCGA 1655 0.0 38.20242 6 AGGGCTT 865 0.0 37.97688 6 CGGTCTA 95 0.0 37.894737 31 >>END_MODULE