##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545441_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1386554 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.048376767150792 31.0 31.0 33.0 30.0 34.0 2 31.33574530815244 31.0 31.0 34.0 30.0 34.0 3 31.411300966280432 31.0 31.0 34.0 30.0 34.0 4 35.225548373882305 37.0 35.0 37.0 33.0 37.0 5 35.102544870232244 37.0 35.0 37.0 32.0 37.0 6 35.14563803501342 37.0 35.0 37.0 32.0 37.0 7 35.659217022921574 37.0 35.0 37.0 35.0 37.0 8 35.62273881868286 37.0 35.0 37.0 35.0 37.0 9 37.390444223593164 39.0 37.0 39.0 35.0 39.0 10 36.802151953692395 39.0 37.0 39.0 32.0 39.0 11 36.38972228993606 38.0 35.0 39.0 32.0 39.0 12 34.942215737721 35.0 34.0 39.0 30.0 39.0 13 34.167635735788146 35.0 33.0 39.0 25.0 39.0 14 35.02702960000116 35.0 33.0 40.0 25.0 41.0 15 35.627021378179286 35.0 33.0 40.0 30.0 41.0 16 35.89610862613357 35.0 34.0 40.0 31.0 41.0 17 35.86559989729935 35.0 34.0 40.0 31.0 41.0 18 35.825473800515525 36.0 34.0 40.0 31.0 41.0 19 35.6810452387718 36.0 34.0 40.0 30.0 41.0 20 35.47625191662207 35.0 34.0 40.0 30.0 41.0 21 35.25729975175868 35.0 34.0 40.0 30.0 41.0 22 35.11700373732289 35.0 34.0 40.0 29.0 41.0 23 35.160025502072045 35.0 34.0 39.0 30.0 41.0 24 35.077269258896514 35.0 34.0 39.0 29.0 41.0 25 34.95788263565645 35.0 34.0 39.0 29.0 41.0 26 34.803067893497115 35.0 34.0 39.0 29.0 41.0 27 34.647020599269844 35.0 34.0 39.0 29.0 41.0 28 34.7923636583934 35.0 34.0 39.0 29.0 41.0 29 34.933747982408185 35.0 34.0 39.0 29.0 41.0 30 34.86074974360898 35.0 34.0 39.0 29.0 41.0 31 34.56128070021074 35.0 34.0 39.0 29.0 41.0 32 34.25511592047623 35.0 33.0 39.0 27.0 41.0 33 33.97857494190634 35.0 33.0 39.0 25.0 41.0 34 33.81375337707727 35.0 33.0 39.0 24.0 41.0 35 33.599794887180735 35.0 33.0 39.0 23.0 41.0 36 33.33079634835715 35.0 33.0 39.0 22.0 41.0 37 33.241856429681064 35.0 32.0 39.0 23.0 41.0 38 33.32316808432993 35.0 32.0 39.0 23.0 41.0 39 33.34122724394434 35.0 33.0 39.0 23.0 41.0 40 33.08987388879193 35.0 32.0 39.0 22.0 41.0 41 33.153964432687076 35.0 32.0 38.0 23.0 41.0 42 33.12656773555159 35.0 32.0 38.0 23.0 41.0 43 32.962709710548594 35.0 32.0 38.0 23.0 41.0 44 32.910736978148705 35.0 32.0 38.0 23.0 40.0 45 32.86245396861572 35.0 32.0 38.0 23.0 40.0 46 32.833780725453174 35.0 32.0 38.0 23.0 40.0 47 32.78011458623321 35.0 32.0 38.0 23.0 40.0 48 32.836280447786386 35.0 32.0 38.0 23.0 40.0 49 32.91285590031113 35.0 32.0 38.0 23.0 40.0 50 32.733246595516654 35.0 32.0 38.0 22.0 40.0 51 32.54780123961995 35.0 32.0 38.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 5.0 14 17.0 15 48.0 16 146.0 17 442.0 18 991.0 19 2015.0 20 3450.0 21 5524.0 22 8433.0 23 12058.0 24 17114.0 25 23643.0 26 31113.0 27 35348.0 28 37766.0 29 41356.0 30 48228.0 31 58842.0 32 73644.0 33 96585.0 34 172978.0 35 249867.0 36 81073.0 37 89350.0 38 122455.0 39 173973.0 40 88.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.366722103863246 23.047497609180745 29.99991345450664 16.585866832449366 2 29.651495722488992 25.879626758135636 31.223450366880773 13.245427152494601 3 26.483497938053617 25.06292578579702 34.2791553736818 14.174420902467554 4 24.106309599193395 27.559114178026967 33.985333423725294 14.349242799054347 5 22.478100384117745 32.12662471133471 31.713802708008487 13.681472196539046 6 20.164450861632506 38.72030948668426 30.66068829630869 10.454551355374548 7 85.46237651039917 5.011272550510114 8.093734539008217 1.4326164000825066 8 88.34059113456814 3.103665634371254 7.446879097388201 1.1088641336723994 9 85.02669207257705 4.153390347581126 8.955583410382863 1.8643341694589608 10 62.806785743649364 15.992525354223492 13.574372148506297 7.626316753620848 11 58.94599128486882 15.595497903435424 17.296477454177765 8.162033357517991 12 50.91817556330298 19.711313082649504 20.270108484775925 9.10040286927159 13 18.62379683733919 51.51822431726424 20.292610313049476 9.5653685323471 14 11.541562751973599 52.06735547263215 26.760948365516235 9.630133409878013 15 9.90325656267264 20.041339897328196 60.191092449338434 9.864311090660731 16 11.261948687176988 13.935627462038983 57.52989064976914 17.272533201014888 17 11.642099766759896 13.646998241684061 30.2723153948566 44.438586596699444 18 19.816682220815057 20.57583044006941 40.182495596998024 19.42499174211751 19 32.08522711701095 20.20152118128829 27.177520673554728 20.53573102814604 20 34.1396728868836 20.172384198523822 26.168328099735028 19.51961481485755 21 20.03715686514914 29.15364277193676 30.574936136638026 20.23426422627608 22 21.959260151425767 23.77498460211431 25.503153862020522 28.762601384439407 23 15.961152612880566 32.54564914168507 25.27164466728306 26.2215535781513 24 17.053861587792472 20.611314092346927 48.407707164668665 13.927117155191937 25 12.614510505901682 22.67571259395595 44.7385388524356 19.97123804770676 26 13.400055100630773 37.9624594498303 29.301058595626277 19.33642685391265 27 13.988925061699724 39.82578392186673 30.363765132840122 15.821525883593427 28 11.101767403216895 29.829490953832305 44.83280131895332 14.235940323997479 29 10.980747955002112 23.52616630870489 43.81091540610751 21.682170330185482 30 15.046943718023243 33.81469455931756 34.453544542801794 16.684817179857404 31 32.16073805996737 25.863832205597475 25.98723165487965 15.988198079555502 32 33.69064601883519 24.564640107777986 28.256238127040127 13.488475746346698 33 31.688343908711815 26.22357297299636 24.043852601485412 18.044230516806415 34 18.629350173163107 26.715872587724675 28.78149715048963 25.873280088622586 35 18.971421235667705 25.09646216447394 34.10166499104975 21.830451608808602 36 35.87245790643567 22.044074734918365 25.83483946532194 16.248627893324024 37 18.639519268632885 36.316508408615896 29.73652666971499 15.307445653036233 38 19.424919620873045 37.235188820630135 22.35535002603577 20.98454153246105 39 19.921113782802543 35.00938297390509 27.233631001749664 17.835872241542702 40 25.151995522713143 24.527641909366675 24.04551139010814 26.274851177812042 41 14.389991302177918 23.59042633752454 27.56784084860741 34.45174151169013 42 21.23473012951533 23.524651762571093 24.19992297451091 31.040695133402668 43 21.593749684469554 24.961667558566056 25.98614983621265 27.458432920751736 44 17.795844950863795 31.725919077078856 30.3418402745223 20.13639569753504 45 15.268211696046457 44.494841167383306 20.528807388677254 19.70813974789298 46 21.637671522349653 36.42259875922611 24.63892498957848 17.300804728845755 47 21.544418753254472 27.792426403876085 25.588906021691187 25.07424882117826 48 23.72594215587709 23.198086767626794 33.440818028003235 19.63515304849288 49 21.507492676087626 22.41874459992182 35.842094862515275 20.231667861475284 50 18.816937530020468 38.52017303328972 24.405324278751493 18.257565157938313 51 16.737682052051344 38.27640322699296 23.02398608348467 21.961928637471026 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1127.0 1 1451.5 2 1776.0 3 7073.0 4 12370.0 5 9450.5 6 6531.0 7 7389.5 8 8248.0 9 9312.5 10 10377.0 11 10657.0 12 10937.0 13 10626.5 14 10316.0 15 9620.0 16 8924.0 17 8188.5 18 7453.0 19 7295.5 20 7138.0 21 6529.5 22 5921.0 23 6378.5 24 6836.0 25 6811.0 26 8499.0 27 10212.0 28 9849.0 29 9486.0 30 12124.5 31 14763.0 32 17776.0 33 20789.0 34 24373.0 35 27957.0 36 30219.5 37 32482.0 38 42522.0 39 52562.0 40 86086.5 41 119611.0 42 149811.0 43 180011.0 44 176507.0 45 173003.0 46 159825.5 47 146648.0 48 127354.0 49 108060.0 50 106904.5 51 105749.0 52 91992.0 53 78235.0 54 69115.0 55 59995.0 56 52261.5 57 44528.0 58 39720.0 59 34912.0 60 30545.5 61 26179.0 62 21434.5 63 16690.0 64 12635.5 65 8581.0 66 7033.0 67 5485.0 68 4114.0 69 2743.0 70 2084.5 71 1426.0 72 1081.0 73 736.0 74 559.0 75 318.5 76 255.0 77 206.5 78 158.0 79 122.0 80 86.0 81 63.0 82 40.0 83 39.0 84 38.0 85 23.5 86 9.0 87 6.0 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1386554.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.466461782803004 #Duplication Level Percentage of deduplicated Percentage of total 1 83.80880072177287 12.96225613425853 2 6.24096317853846 1.9305123697749171 3 1.8868653863681681 0.875493941626713 4 0.9053285290067656 0.560089163790576 5 0.49775823657369794 0.3849279371521258 6 0.36159162319725247 0.3355525812697206 7 0.2539209156960952 0.27490806969276 8 0.2205316797502866 0.2728675837404127 9 0.1821280889115079 0.2535189414052306 >10 2.3699319757961983 9.14517182337422 >50 1.1397374503611817 12.93007423232207 >100 2.1197992759997075 57.93489605704407 >500 0.011706424099843757 1.0924252796091434 >1k 0.0 0.0 >5k 9.365139279875007E-4 1.0473058849395267 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7272 0.5244656897603699 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7189 0.5184796264696506 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011539399114639602 0.0 2 0.0 0.0 0.0 0.04183032179056856 0.0 3 0.0 0.0 0.0 0.060509724107391416 0.0 4 0.0 0.0 0.0 0.10313337958709146 0.0 5 0.0 0.0 0.0 0.15830613160396206 0.0 6 0.0 0.0 0.0 0.24030798656236974 0.0 7 0.0 0.0 0.0 0.2872589167100596 0.0 8 0.0 0.0 0.0 0.43416989168831505 0.0 9 0.0 0.0 0.0 0.495328706995905 0.0 10 0.0 0.0 0.0 0.5940626906705401 0.0 11 0.0 0.0 0.0 0.6755596969176823 0.0 12 0.0 0.0 0.0 0.7526573072523681 0.0 13 0.0 0.0 0.0 0.7805682288609026 0.0 14 0.0 0.0 0.0 0.7890785357079494 0.0 15 0.0 0.0 0.0 0.8033585421123158 0.0 16 0.0 0.0 0.0 0.8377603757228351 0.0 17 0.0 0.0 0.0 0.8798791824912697 0.0 18 0.0 0.0 0.0 0.9492598196680403 0.0 19 0.0 0.0 0.0 0.974430133986848 0.0 20 0.0 0.0 0.0 1.0054422691074418 0.0 21 7.212124446649752E-5 0.0 0.0 1.042440467518755 0.0 22 7.212124446649752E-5 0.0 0.0 1.0797992721524008 0.0 23 7.212124446649752E-5 0.0 0.0 1.1248750499439617 0.0 24 7.212124446649752E-5 0.0 0.0 1.1567526399981536 0.0 25 7.212124446649752E-5 0.0 0.0 1.1837981066730903 0.0 26 7.212124446649752E-5 0.0 0.0 1.2101223609033618 0.0 27 7.212124446649752E-5 0.0 0.0 1.2382496462452959 0.0 28 7.212124446649752E-5 0.0 0.0 1.264790264208967 0.0 29 7.212124446649752E-5 0.0 0.0 1.2941436107068314 0.0 30 7.212124446649752E-5 0.0 0.0 1.3470806041452406 0.0 31 7.212124446649752E-5 0.0 0.0 1.3910024420253377 0.0 32 7.212124446649752E-5 0.0 0.0 1.4273515492364524 0.0 33 7.212124446649752E-5 0.0 0.0 1.462258231558237 0.0 34 7.212124446649752E-5 0.0 0.0 1.5072618881053317 0.0 35 7.212124446649752E-5 0.0 0.0 1.5723873718585788 0.0 36 7.212124446649752E-5 0.0 0.0 1.6184728470726708 0.0 37 7.212124446649752E-5 0.0 0.0 1.6629716549084999 0.0 38 7.212124446649752E-5 0.0 0.0 1.705451067899267 0.0 39 7.212124446649752E-5 0.0 0.0 1.7478583596455675 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGTACG 115 0.0 45.000004 1 TGATCGC 20 7.033791E-4 45.0 40 CTATGCG 20 7.033791E-4 45.0 1 AAGTACG 20 7.033791E-4 45.0 44 TAATACG 105 0.0 45.0 1 GGTACGA 35 1.2121745E-7 45.0 8 ACACGGT 40 6.8175723E-9 45.0 3 TCACCGT 20 7.033791E-4 45.0 13 GATCGAC 20 7.033791E-4 45.0 16 GTACAAC 20 7.033791E-4 45.0 40 GCGGTAC 20 7.033791E-4 45.0 17 TAGACCG 35 1.2121745E-7 45.0 1 GTTTACG 40 6.8175723E-9 45.0 1 GCAACGA 20 7.033791E-4 45.0 11 ATAGCCG 45 3.8562575E-10 45.0 2 CGACACT 20 7.033791E-4 45.0 42 TATGCGT 20 7.033791E-4 45.0 21 CGTTCGA 20 7.033791E-4 45.0 14 TCGATAT 20 7.033791E-4 45.0 17 TCGATAG 90 0.0 45.0 1 >>END_MODULE