##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545439_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1791638 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.909414736682297 31.0 31.0 33.0 28.0 34.0 2 31.203714701295684 31.0 31.0 34.0 28.0 34.0 3 31.272011980098657 31.0 31.0 34.0 28.0 34.0 4 35.11685507898359 35.0 35.0 37.0 32.0 37.0 5 34.988737680268 35.0 35.0 37.0 32.0 37.0 6 35.04029273770706 37.0 35.0 37.0 32.0 37.0 7 35.54741192138144 37.0 35.0 37.0 35.0 37.0 8 35.467843392471025 37.0 35.0 37.0 35.0 37.0 9 37.135229884608385 39.0 37.0 39.0 34.0 39.0 10 36.53445227216659 39.0 35.0 39.0 32.0 39.0 11 36.25254097088809 38.0 35.0 39.0 31.0 39.0 12 35.719644258494185 37.0 35.0 39.0 30.0 39.0 13 35.35043518835836 37.0 35.0 39.0 30.0 39.0 14 36.38878501125785 38.0 35.0 40.0 30.0 41.0 15 36.64219334486096 38.0 35.0 40.0 31.0 41.0 16 36.68675703462418 38.0 35.0 40.0 31.0 41.0 17 36.58207405737097 38.0 35.0 40.0 31.0 41.0 18 36.479194457809 38.0 35.0 40.0 31.0 41.0 19 36.3864915792141 38.0 35.0 40.0 30.0 41.0 20 36.24582700299949 38.0 35.0 40.0 30.0 41.0 21 36.07870395693773 38.0 34.0 40.0 30.0 41.0 22 35.98283246950556 37.0 34.0 40.0 30.0 41.0 23 35.899099594895844 37.0 34.0 40.0 30.0 41.0 24 35.770204137219686 37.0 34.0 40.0 30.0 41.0 25 35.61759630014545 37.0 34.0 40.0 29.0 41.0 26 35.4608324895989 37.0 34.0 40.0 29.0 41.0 27 35.371892647956784 37.0 34.0 40.0 29.0 41.0 28 35.36088540207341 37.0 34.0 40.0 28.0 41.0 29 35.36032223027196 37.0 34.0 40.0 29.0 41.0 30 35.236839696411884 37.0 34.0 40.0 27.0 41.0 31 35.08693720494877 37.0 34.0 40.0 27.0 41.0 32 34.86216746909811 37.0 34.0 40.0 25.0 41.0 33 34.57845892976148 37.0 33.0 40.0 24.0 41.0 34 34.35698561874664 37.0 33.0 40.0 23.0 41.0 35 34.13491732146784 36.0 33.0 40.0 23.0 41.0 36 33.961494453678704 36.0 33.0 40.0 22.0 41.0 37 33.90943538817551 36.0 33.0 40.0 22.0 41.0 38 33.85787809814259 36.0 33.0 40.0 22.0 41.0 39 33.78188618459756 36.0 33.0 40.0 22.0 41.0 40 33.592211149797 36.0 32.0 40.0 21.0 41.0 41 33.50759137727599 36.0 32.0 40.0 20.0 41.0 42 33.45156164359095 36.0 32.0 40.0 21.0 41.0 43 33.35338835188805 35.0 32.0 40.0 20.0 41.0 44 33.273235999682974 35.0 32.0 40.0 20.0 41.0 45 33.203161576166615 35.0 32.0 40.0 20.0 41.0 46 33.13969730492432 35.0 32.0 40.0 20.0 41.0 47 33.05935406594413 35.0 32.0 39.0 20.0 41.0 48 32.99422372153303 35.0 31.0 39.0 20.0 41.0 49 32.97527681373135 35.0 31.0 39.0 20.0 41.0 50 32.89079936906897 35.0 31.0 39.0 19.0 41.0 51 32.713571603192165 35.0 31.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 3.0 12 7.0 13 17.0 14 41.0 15 102.0 16 303.0 17 745.0 18 1655.0 19 3233.0 20 5414.0 21 8223.0 22 11812.0 23 16547.0 24 22421.0 25 30840.0 26 39123.0 27 44766.0 28 47808.0 29 52317.0 30 59730.0 31 70420.0 32 84343.0 33 105697.0 34 158188.0 35 199173.0 36 141815.0 37 170983.0 38 226549.0 39 289269.0 40 91.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.500852292706455 21.759920251747282 26.590360329486202 18.148867126060065 2 35.07589144682129 24.970613483304106 26.728278815251745 13.225216254622865 3 29.103479609162118 25.03803781790741 32.59877274315458 13.25970982977588 4 26.19161906590505 27.856408493233566 31.306045082767834 14.645927358093545 5 22.61930144370682 31.169131264239763 32.00573999881672 14.205827293236691 6 21.041359917572635 39.86050753556243 29.43825705862457 9.65987548824037 7 82.28860964101007 5.129384395731727 10.536224393543785 2.0457815697144177 8 82.87968886571953 4.521616531911022 10.425376108343315 2.173318494026137 9 77.79785871922788 6.284249385199465 12.284457016428542 3.633434879144113 10 43.250198979927866 24.86255594042993 18.763611845696506 13.123633233945696 11 36.75541599363264 24.496522176912972 24.577342074682498 14.170719754771891 12 33.779145117484674 22.391353610494978 28.848070871459523 14.981430400560827 13 22.234737151143253 32.156719158669326 28.987607987774318 16.6209357024131 14 17.961887390198246 34.48760296443813 30.855284382224536 16.695225263139093 15 17.1416882204999 23.961927576887742 42.97681786164392 15.919566340968434 16 19.220567994204185 20.12220102498384 41.87888401563262 18.77834696517935 17 19.43757611749695 20.72583859016163 31.980344243647433 27.856241048693985 18 22.35317625547125 23.56502820324195 34.39104327994829 19.690752261338506 19 28.42002681345227 24.083659757160767 28.4752276966664 19.02108573272056 20 30.09659317339775 22.3821441608182 28.5359542496866 18.98530841609745 21 24.613063576459083 25.761788932808972 30.38543500416937 19.239712486562578 22 23.577307469477653 24.61585431878538 28.54923818315977 23.2576000285772 23 21.818414210906447 28.10500781966 28.85521517181484 21.221362797618713 24 20.95830742594207 23.546776748427973 36.82719388626497 18.667721939364984 25 20.330781106451195 25.270506653687853 33.932970834510094 20.465741405350858 26 19.78887476153107 30.247293259017727 29.633441576925694 20.33039040252551 27 20.681186712940896 29.784699811010928 30.393193267836473 19.140920208211703 28 18.99892723864977 27.079075125667128 35.256508290179156 18.665489345503946 29 19.315564862991298 25.827371377476922 34.55346448333871 20.303599276193072 30 20.32681825234785 28.29321548214539 31.821216116202045 19.558750149304714 31 25.071080207050755 26.903314173957014 28.602541361592017 19.42306425740021 32 27.092917207605556 26.03098393760347 29.114865837853404 17.761233016937574 33 25.897195750480844 28.060132683053162 27.13148526655496 18.91118629991103 34 21.086235054179472 27.90653022541384 29.689758757070344 21.317475963336342 35 22.177526933454192 26.87713701093636 30.02755020824519 20.917785847364257 36 26.009216147458357 28.978845056869744 26.13574840453261 18.876190391139282 37 21.506744107905725 31.761773304651946 28.39691946699054 18.33456312045179 38 21.79971623732026 30.89815018435644 26.77739588019455 20.52473769812875 39 22.089953439255027 30.552209765588806 26.767851541438613 20.589985253717547 40 23.967899765466015 26.954328943681706 27.986624530178528 21.09114676067375 41 19.372551821294255 27.190090855407174 28.767306788536523 24.670050534762044 42 22.559356298537985 27.91540478601146 26.208586779248932 23.316652136201622 43 22.409158546536744 27.824594030713794 27.379024110897404 22.387223311852058 44 21.426370728908406 29.499206871030864 28.19146501692864 20.882957383132084 45 19.73266921107947 32.76102650200542 25.93950340414749 21.566800882767613 46 20.57831995079363 31.66097169182614 27.220677391303376 20.540030966076852 47 22.242551229656886 28.767697492462208 27.66831246044123 21.321438817439684 48 22.453810423757478 25.96847130949444 30.295963805188325 21.281754461559757 49 21.638299701167313 27.228603099510057 30.5608052519538 20.572291947368832 50 19.749525294730297 32.269074444726 27.585315783657187 20.396084476886514 51 20.108358943045417 31.42833541150612 26.405724817178474 22.057580828269995 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1625.0 1 2810.5 2 3996.0 3 16106.0 4 28216.0 5 20620.5 6 13025.0 7 13047.5 8 13070.0 9 13552.5 10 14035.0 11 13696.0 12 13357.0 13 13260.0 14 13163.0 15 12844.0 16 12525.0 17 11939.5 18 11354.0 19 11095.0 20 10836.0 21 11310.0 22 11784.0 23 11680.5 24 11577.0 25 13052.0 26 15868.5 27 17210.0 28 22366.0 29 27522.0 30 30654.0 31 33786.0 32 39371.0 33 44956.0 34 49252.0 35 53548.0 36 55214.0 37 56880.0 38 63730.5 39 70581.0 40 85011.0 41 99441.0 42 114620.0 43 129799.0 44 131960.0 45 134121.0 46 132986.0 47 131851.0 48 125525.0 49 119199.0 50 116357.0 51 113515.0 52 108002.5 53 102490.0 54 98668.0 55 94846.0 56 91571.0 57 88296.0 58 85669.5 59 83043.0 60 77884.0 61 72725.0 62 62879.0 63 53033.0 64 43424.0 65 33815.0 66 28065.0 67 22315.0 68 17930.5 69 13546.0 70 11360.5 71 9175.0 72 7566.5 73 5958.0 74 4563.0 75 2574.0 76 1980.0 77 1433.5 78 887.0 79 674.0 80 461.0 81 347.5 82 234.0 83 155.0 84 76.0 85 55.0 86 34.0 87 35.0 88 36.0 89 25.0 90 14.0 91 9.0 92 4.0 93 2.5 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1791638.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.991683647675583 #Duplication Level Percentage of deduplicated Percentage of total 1 79.33166802473109 16.653052784175753 2 5.454574622086946 2.2900140979897756 3 2.3043776718972713 1.4511830127970404 4 1.3888737374270166 1.166191924905311 5 0.9735488696493504 1.0218214943615656 6 0.7552268251358599 0.9512089557294228 7 0.5714472086713439 0.8396947318043276 8 0.5075666567701446 0.8523742951221767 9 0.43477856885072214 0.8214060756693146 >10 5.700105740961603 28.58858864872225 >50 2.112634049862377 31.318292942948105 >100 0.46199712012969923 12.5145211778038 >500 0.001600451913342146 0.22576633133507326 >1k 0.0013337099277851217 0.4434135857744159 >5k 0.0 0.0 >10k+ 2.667419855570243E-4 0.8624699408616402 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15403 0.859716081038692 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3138 0.175146988398326 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.581484652591651E-5 0.0 0.0 0.007255930048369146 0.0 2 5.581484652591651E-5 0.0 0.0 0.028019052956010086 0.0 3 5.581484652591651E-5 0.0 0.0 0.04314487636453346 0.0 4 5.581484652591651E-5 0.0 0.0 0.061898664797241404 0.0 5 5.581484652591651E-5 0.0 0.0 0.10264350276116045 0.0 6 5.581484652591651E-5 0.0 0.0 0.16683057626596445 0.0 7 5.581484652591651E-5 0.0 0.0 0.20606841337368376 0.0 8 5.581484652591651E-5 0.0 0.0 0.2958745014338834 0.0 9 5.581484652591651E-5 0.0 0.0 0.34370782490659385 0.0 10 5.581484652591651E-5 0.0 0.0 0.416490384776389 0.0 11 5.581484652591651E-5 0.0 0.0 0.4915055385072208 0.0 12 5.581484652591651E-5 0.0 0.0 0.5563623901703357 0.0 13 1.1162969305183302E-4 0.0 0.0 0.5863349627547529 0.0 14 1.1162969305183302E-4 0.0 0.0 0.600958452544543 0.0 15 1.1162969305183302E-4 0.0 0.0 0.619656426130725 0.0 16 1.1162969305183302E-4 0.0 0.0 0.6542058161302674 0.0 17 1.1162969305183302E-4 0.0 0.0 0.6908761702977946 0.0 18 1.1162969305183302E-4 0.0 0.0 0.7436770151113116 0.0 19 1.1162969305183302E-4 0.0 0.0 0.7696867335923886 0.0 20 1.6744453957774952E-4 0.0 0.0 0.7972592677761914 0.0 21 1.6744453957774952E-4 0.0 0.0 0.830915620231319 0.0 22 1.6744453957774952E-4 0.0 0.0 0.8692046049480978 0.0 23 1.6744453957774952E-4 0.0 0.0 0.9139681118618828 0.0 24 1.6744453957774952E-4 0.0 0.0 0.9467314267725958 0.0 25 1.6744453957774952E-4 0.0 0.0 0.9766481845104871 0.0 26 1.6744453957774952E-4 0.0 0.0 1.0044439780803935 0.0 27 1.6744453957774952E-4 0.0 0.0 1.0364816999862696 0.0 28 1.6744453957774952E-4 0.0 0.0 1.0705287563670787 0.0 29 1.6744453957774952E-4 0.0 0.0 1.103682775203473 0.0 30 1.6744453957774952E-4 0.0 0.0 1.1507905056713466 0.0 31 1.6744453957774952E-4 0.0 0.0 1.1906981209373768 0.0 32 2.2325938610366603E-4 0.0 0.0 1.234066256688014 0.0 33 2.2325938610366603E-4 0.0 0.0 1.2766529845872883 0.0 34 2.2325938610366603E-4 0.0 0.0 1.3195187867191922 0.0 35 2.2325938610366603E-4 0.0 0.0 1.3736591878493312 0.0 36 2.2325938610366603E-4 0.0 0.0 1.4208785480102566 0.0 37 2.2325938610366603E-4 0.0 0.0 1.468711871482967 0.0 38 2.2325938610366603E-4 0.0 0.0 1.5177173067327216 0.0 39 2.2325938610366603E-4 0.0 0.0 1.5821276396236292 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACTCGC 20 7.034344E-4 45.0 22 TCGTTGA 385 0.0 42.077923 24 TAGCCGT 70 0.0 41.785713 44 CGTTTTT 11430 0.0 41.73228 1 CGTTGAT 405 0.0 40.0 25 TACGGGT 125 0.0 39.600002 4 TCGATTG 35 6.250246E-6 38.571426 1 TCTATCG 35 6.250246E-6 38.571426 14 AGGGCGA 1990 0.0 37.989952 6 AATACGG 160 0.0 37.96875 2 GGGCGAT 3755 0.0 37.689747 7 ATCGTTG 425 0.0 37.588238 23 CCGACGG 30 1.1401765E-4 37.500004 2 CGTAATC 30 1.1401765E-4 37.500004 33 ACGTTAG 115 0.0 37.173916 1 AATCGTT 430 0.0 37.15116 22 GCGATCG 85 0.0 37.058823 9 CGGGTAT 165 0.0 36.818184 6 TTACACG 610 0.0 36.516396 34 TGGGCGA 1170 0.0 36.346153 6 >>END_MODULE