SRR1545438_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545438_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	552643
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6125	1.1083104282511496	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1374	0.24862343321095173	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1011	0.18293907640194484	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	727	0.13154966225936093	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	563	0.10187408507843218	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	556	0.10060744458900231	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGCGG	55	1.8189894E-12	45.000004	2
TCACGAC	40	6.8048394E-9	45.0	25
AAACTCG	20	7.030106E-4	45.0	23
CAACGCG	25	3.8881673E-5	45.0	1
TAGCGGA	20	7.030106E-4	45.0	3
GTTAGCG	25	3.8881673E-5	45.0	1
ACGGGCC	40	6.8048394E-9	45.0	5
TATCTCG	25	3.8881673E-5	45.0	1
TATCTAG	20	7.030106E-4	45.0	1
GTGTACG	20	7.030106E-4	45.0	1
CGGTCTA	40	6.8048394E-9	45.0	31
AATACTC	20	7.030106E-4	45.0	10
GCCGTAT	25	3.8881673E-5	45.0	29
CGCCCCA	25	3.8881673E-5	45.0	37
ACACGCG	30	2.1634478E-6	44.999996	36
CTCATAC	30	2.1634478E-6	44.999996	30
CATACGC	30	2.1634478E-6	44.999996	32
TTACACG	30	2.1634478E-6	44.999996	34
GCGCGAC	75	0.0	42.0	9
CGACCCG	75	0.0	42.0	32