##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545438_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 552643 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.98758873269 31.0 31.0 33.0 30.0 34.0 2 31.277028750929624 31.0 31.0 34.0 30.0 34.0 3 31.320897939537822 31.0 31.0 34.0 28.0 34.0 4 35.1724422457174 37.0 35.0 37.0 32.0 37.0 5 35.05623521875786 37.0 35.0 37.0 32.0 37.0 6 35.11193844851016 37.0 35.0 37.0 32.0 37.0 7 35.60759658586103 37.0 35.0 37.0 35.0 37.0 8 35.534929420982444 37.0 35.0 37.0 35.0 37.0 9 37.213278735096615 39.0 37.0 39.0 34.0 39.0 10 36.65089578624899 39.0 35.0 39.0 32.0 39.0 11 36.357071382429524 38.0 35.0 39.0 32.0 39.0 12 35.61459748879476 37.0 35.0 39.0 31.0 39.0 13 35.19062034622713 37.0 35.0 39.0 30.0 39.0 14 36.211248491340704 38.0 35.0 40.0 30.0 41.0 15 36.53389258526752 38.0 35.0 40.0 31.0 41.0 16 36.588600597492416 38.0 35.0 40.0 31.0 41.0 17 36.51338386625724 38.0 35.0 40.0 31.0 41.0 18 36.397761303409254 38.0 35.0 40.0 31.0 41.0 19 36.23307813543282 37.0 35.0 40.0 31.0 41.0 20 36.01652422992782 37.0 34.0 40.0 30.0 41.0 21 35.87492648961445 36.0 34.0 40.0 30.0 41.0 22 35.7558025705564 36.0 34.0 40.0 30.0 41.0 23 35.71077169167075 36.0 34.0 40.0 30.0 41.0 24 35.57480507307611 36.0 34.0 40.0 30.0 41.0 25 35.44127583268041 36.0 34.0 40.0 29.0 41.0 26 35.27340977810268 36.0 34.0 40.0 29.0 41.0 27 35.16454021854977 36.0 34.0 40.0 29.0 41.0 28 35.186545382823994 36.0 34.0 40.0 29.0 41.0 29 35.229936867019035 36.0 34.0 40.0 29.0 41.0 30 35.08898692284169 36.0 34.0 40.0 28.0 41.0 31 34.86493450563926 36.0 34.0 40.0 27.0 41.0 32 34.560660317782 35.0 33.0 40.0 25.0 41.0 33 34.19508434920916 35.0 33.0 40.0 23.0 41.0 34 33.94198062763846 35.0 33.0 40.0 23.0 41.0 35 33.698584800676024 35.0 33.0 40.0 22.0 41.0 36 33.48267145336139 35.0 33.0 40.0 21.0 41.0 37 33.41135959380649 35.0 32.0 40.0 20.0 41.0 38 33.39416585390568 35.0 32.0 40.0 20.0 41.0 39 33.33413433265236 35.0 32.0 40.0 20.0 41.0 40 33.155697258447134 35.0 32.0 40.0 18.0 41.0 41 33.122113190613106 35.0 32.0 40.0 18.0 41.0 42 33.040051172275774 35.0 32.0 40.0 18.0 41.0 43 32.92238750875339 35.0 32.0 40.0 18.0 41.0 44 32.84145460993806 35.0 32.0 39.0 18.0 41.0 45 32.79825493130285 35.0 31.0 39.0 18.0 41.0 46 32.73679934424212 35.0 31.0 39.0 18.0 41.0 47 32.661915558507026 35.0 31.0 39.0 18.0 41.0 48 32.61051347795955 35.0 31.0 39.0 18.0 41.0 49 32.63269959087512 35.0 31.0 39.0 18.0 41.0 50 32.52617150674124 35.0 31.0 39.0 18.0 41.0 51 32.338102536357106 35.0 31.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 3.0 14 9.0 15 28.0 16 65.0 17 233.0 18 488.0 19 937.0 20 1685.0 21 2554.0 22 3542.0 23 5272.0 24 7144.0 25 10384.0 26 13489.0 27 15353.0 28 15653.0 29 16340.0 30 18811.0 31 21782.0 32 26757.0 33 33829.0 34 53494.0 35 71398.0 36 40271.0 37 46940.0 38 62389.0 39 83757.0 40 34.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.76101027245437 22.589809334416614 26.043937949091912 19.605242444037106 2 34.85686057726235 24.977064759709254 27.94480342644347 12.22127123658492 3 28.189807886827484 24.43059986284093 34.9453444628811 12.434247787450488 4 26.428815709237245 26.546794223395576 32.75333262160201 14.271057445765168 5 22.10142895142072 30.714765228185286 33.36222479973509 13.821581020658908 6 20.442129910267568 39.58595331886951 30.40154313001341 9.570373640849517 7 80.82613911693444 5.322242387943031 12.081397936823592 1.770220558298938 8 81.74246303671629 4.588314698639085 12.007389942512617 1.661832322132009 9 76.66486321187458 6.192243455540014 13.959463885365416 3.183429447219996 10 46.607665346344746 22.491192324882427 19.353723832564604 11.547418496208222 11 41.318717508409584 21.339092325425273 24.667823531647013 12.674366634518124 12 36.82558179511909 21.6997229676301 28.772100614682532 12.702594622568276 13 20.449367855921455 37.19851694493552 28.304710274082908 14.04740492506012 14 15.400719813695279 38.256161753609476 31.894188472485858 14.448929960209394 15 15.554526158840337 22.79717647740042 47.800478790105004 13.847818573654239 16 16.262759141072987 19.162099221377996 46.31887131475473 18.256270322794283 17 16.5265822601571 19.694269175579894 33.0274698132429 30.7516787510201 18 20.82881715682638 23.004724569025573 37.03385368130964 19.132604592838415 19 28.41418420209792 22.256682885696552 30.242670222910633 19.086462689294898 20 29.294137444968992 22.13273306637377 30.598415251799082 17.97471423685815 21 22.544391225438485 26.16535448743583 32.39957802776838 18.890676259357306 22 21.693570713824293 24.658957048221 29.359098007212616 24.28837423074209 23 19.49432092689132 28.27195856999908 29.58655044938595 22.64717005372365 24 18.509960317962953 23.43827751369329 41.627958736471825 16.42380343187193 25 17.47041037342371 24.743098166447417 38.79936957493354 18.987121885195325 26 16.78045320396712 31.870303251828037 31.927121125211034 19.42212241899382 27 17.93309604934831 32.61979252428783 32.47430981664474 16.972801609719113 28 16.19399865736108 27.81234902097738 39.63408565746784 16.359566664193704 29 16.120171611691454 24.623672063158313 38.674153115121335 20.582003210028898 30 17.619331105252396 30.35558217511124 34.06484837408598 17.960238345550383 31 26.25999062686038 27.093440068905245 29.00154349191069 17.645025812323688 32 27.54183080216342 26.036700003438025 30.250451014488554 16.171018179909996 33 25.89465531998053 27.87513819952483 27.799320718800384 18.430885761694256 34 19.504634999448108 27.789187594884947 30.6664519409456 22.03972546472135 35 20.85957842585539 25.813047482732976 31.944854092063053 21.382519999348585 36 27.786654313906084 27.352739471955672 27.246884516767604 17.613721697370636 37 19.924073950090744 33.39262417148141 30.138443805494685 16.54485807293316 38 20.429644454014618 33.36222479973509 26.229229357831368 19.978901388418922 39 20.93069124190481 31.895997958899326 28.50592516326091 18.667385635934952 40 23.15853091417063 27.671209080726616 27.20834245616067 21.961917548942083 41 17.839907499054544 26.747285318008192 29.1897300789117 26.223077104025567 42 20.669763301082252 27.280902861340866 26.379959576073524 25.669374261503357 43 21.365510827061954 26.911767632992728 28.119418865343448 23.603302674601867 44 18.610024916627914 30.528569076239094 30.132110603047536 20.729295404085455 45 17.887858889011532 35.997379863673295 25.78753372430303 20.32722752301214 46 20.751733035612503 33.29364526466453 26.729552351156173 19.225069348566795 47 20.821217313889797 29.03320950414644 28.572876160559346 21.572697021404416 48 22.04967763999544 26.265419086100795 31.9227783578187 19.762124916085067 49 20.58055562089812 26.620259371782506 32.83385476700148 19.96533024031789 50 19.699335737537616 33.27319806819231 28.189445989544787 18.838020204725293 51 18.62468175657703 32.64204920717353 27.152429325984407 21.580839710265035 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 810.0 1 1122.0 2 1434.0 3 6060.0 4 10686.0 5 7841.5 6 4997.0 7 5143.0 8 5289.0 9 5558.5 10 5828.0 11 5887.0 12 5946.0 13 5769.0 14 5592.0 15 5169.0 16 4746.0 17 4529.0 18 4312.0 19 3977.5 20 3643.0 21 3563.5 22 3484.0 23 3470.5 24 3457.0 25 3740.5 26 5000.0 27 5976.0 28 7095.5 29 8215.0 30 9217.0 31 10219.0 32 11194.5 33 12170.0 34 13345.5 35 14521.0 36 15904.0 37 17287.0 38 19393.5 39 21500.0 40 27666.0 41 33832.0 42 41528.0 43 49224.0 44 50284.0 45 51344.0 46 48272.0 47 45200.0 48 42475.5 49 39751.0 50 36220.0 51 32689.0 52 31061.5 53 29434.0 54 27476.0 55 25518.0 56 24836.0 57 24154.0 58 21917.5 59 19681.0 60 18102.0 61 16523.0 62 14197.0 63 11871.0 64 9517.0 65 7163.0 66 5987.5 67 4812.0 68 3828.5 69 2845.0 70 2377.0 71 1909.0 72 1534.5 73 1160.0 74 922.5 75 521.0 76 357.0 77 273.0 78 189.0 79 133.0 80 77.0 81 65.5 82 54.0 83 37.0 84 20.0 85 13.0 86 6.0 87 5.0 88 4.0 89 4.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 552643.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.096444995711543 #Duplication Level Percentage of deduplicated Percentage of total 1 76.2792990386746 19.143392326355293 2 5.440401518225717 2.7306947491347455 3 2.5104359995543404 1.8900905693420886 4 1.640717158460512 1.6470467168329748 5 1.248407576946742 1.5665296043536714 6 0.994051987968415 1.496830262335622 7 0.857938444958248 1.5071843495520674 8 0.7141374006603098 1.4337847996041504 9 0.6455719926801279 1.458140580456185 >10 8.983901320993434 53.823969476187195 >50 0.6411907772670973 9.829080270331303 >100 0.03890371008137444 1.504836655261252 >500 0.002881756302324033 0.4297725254783126 >1k 0.0014408781511620165 0.43121896224895895 >5k 7.204390755810083E-4 1.1074281525261525 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6125 1.1083104282511496 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1374 0.24862343321095173 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1011 0.18293907640194484 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 727 0.13154966225936093 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 563 0.10187408507843218 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 556 0.10060744458900231 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011399764404868966 0.0 2 0.0 0.0 0.0 0.045418108978128736 0.0 3 0.0 0.0 0.0 0.06134158941667586 0.0 4 0.0 0.0 0.0 0.08034119675812414 0.0 5 0.0 0.0 0.0 0.1237688706814345 0.0 6 0.0 0.0 0.0 0.1738916443345885 0.0 7 0.0 0.0 0.0 0.20012919732992185 0.0 8 0.0 0.0 0.0 0.2612898381052506 0.0 9 0.0 0.0 0.0 0.29042256936213795 0.0 10 0.0 0.0 0.0 0.3380120620364322 0.0 11 0.0 0.0 0.0 0.40604875118295175 0.0 12 0.0 0.0 0.0 0.4590667030976598 0.0 13 0.0 0.0 0.0 0.48892322891993567 0.0 14 0.0 0.0 0.0 0.502313428379623 0.0 15 0.0 0.0 0.0 0.5213130357210712 0.0 16 0.0 0.0 0.0 0.556598020783761 0.0 17 0.0 0.0 0.0 0.6012923351965012 0.0 18 0.0 0.0 0.0 0.6611863354824 0.0 19 0.0 0.0 0.0 0.6876048371190805 0.0 20 0.0 0.0 0.0 0.7163756710932736 0.0 21 0.0 0.0 0.0 0.7569081667550299 0.0 22 0.0 0.0 0.0 0.7934597923071495 0.0 23 0.0 0.0 0.0 0.8405064390574023 0.0 24 0.0 0.0 0.0 0.8756104754787448 0.0 25 0.0 0.0 0.0 0.9049241553769793 0.0 26 0.0 0.0 0.0 0.9378568081021563 0.0 27 0.0 0.0 0.0 0.9707894608273334 0.0 28 0.0 0.0 0.0 1.0077029836621472 0.0 29 0.0 0.0 0.0 1.043349866007531 0.0 30 0.0 0.0 0.0 1.0936535883020322 0.0 31 0.0 0.0 0.0 1.141966875541715 0.0 32 0.0 0.0 0.0 1.1826803198448184 0.0 33 0.0 0.0 0.0 1.2244794559960046 0.0 34 0.0 0.0 0.0 1.269173770408745 0.0 35 0.0 0.0 0.0 1.3268963869984782 0.0 36 0.0 0.0 0.0 1.3829904658160874 0.0 37 0.0 0.0 0.0 1.4419797228952507 0.0 38 0.0 0.0 0.0 1.4915596506243634 0.0 39 0.0 0.0 0.0 1.5478346780833196 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGCGG 55 1.8189894E-12 45.000004 2 TCACGAC 40 6.8048394E-9 45.0 25 AAACTCG 20 7.030106E-4 45.0 23 CAACGCG 25 3.8881673E-5 45.0 1 TAGCGGA 20 7.030106E-4 45.0 3 GTTAGCG 25 3.8881673E-5 45.0 1 ACGGGCC 40 6.8048394E-9 45.0 5 TATCTCG 25 3.8881673E-5 45.0 1 TATCTAG 20 7.030106E-4 45.0 1 GTGTACG 20 7.030106E-4 45.0 1 CGGTCTA 40 6.8048394E-9 45.0 31 AATACTC 20 7.030106E-4 45.0 10 GCCGTAT 25 3.8881673E-5 45.0 29 CGCCCCA 25 3.8881673E-5 45.0 37 ACACGCG 30 2.1634478E-6 44.999996 36 CTCATAC 30 2.1634478E-6 44.999996 30 CATACGC 30 2.1634478E-6 44.999996 32 TTACACG 30 2.1634478E-6 44.999996 34 GCGCGAC 75 0.0 42.0 9 CGACCCG 75 0.0 42.0 32 >>END_MODULE