SRR1545437_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545437_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1052555
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6605	0.6275206521274423	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2245	0.2132905168851034	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1665	0.158186508068462	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1191	0.11315323189762054	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACC	20	7.033014E-4	45.000004	18
ACGCCTA	20	7.033014E-4	45.000004	38
ACACCGT	20	7.033014E-4	45.000004	19
TTCGTAC	20	7.033014E-4	45.000004	33
CGTTATG	20	7.033014E-4	45.000004	2
GCGATAT	85	0.0	45.000004	9
CGTACAT	20	7.033014E-4	45.000004	35
CTCGACC	20	7.033014E-4	45.000004	28
ATCGGAT	20	7.033014E-4	45.000004	40
TGCGTTA	20	7.033014E-4	45.000004	22
GTCGATG	50	2.1827873E-11	45.0	1
CTAACCG	25	3.890582E-5	45.0	3
CGGATAT	25	3.890582E-5	45.0	34
TACGAAG	35	1.2117926E-7	45.0	1
ACGGATA	25	3.890582E-5	45.0	33
CGGGCTA	45	3.8562575E-10	45.0	6
ACGTAAG	25	3.890582E-5	45.0	1
CGCGTAA	25	3.890582E-5	45.0	31
CGTAAGG	125	0.0	41.399998	2
ACGTAGG	60	3.6379788E-12	41.249996	2