SRR1545435_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545435_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	773190
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5401	0.698534642196614	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2757	0.3565747099677957	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGAT	20	7.031851E-4	45.000004	42
CGTGGTA	20	7.031851E-4	45.000004	3
ACGCCGA	20	7.031851E-4	45.000004	12
CGCGGTA	20	7.031851E-4	45.000004	32
CCGATTC	20	7.031851E-4	45.000004	11
CACGGAA	20	7.031851E-4	45.000004	11
CCGTGTT	20	7.031851E-4	45.000004	23
GCACGGT	30	2.1645756E-6	45.000004	3
TGTATCG	20	7.031851E-4	45.000004	1
TAACGCG	20	7.031851E-4	45.000004	1
CCTAAAC	20	7.031851E-4	45.000004	20
TAGCCGT	30	2.1645756E-6	45.000004	44
ACGATAT	30	2.1645756E-6	45.000004	38
GCCGACC	20	7.031851E-4	45.000004	14
TGCGCAC	20	7.031851E-4	45.000004	12
CATAGTA	20	7.031851E-4	45.000004	31
TACGATA	30	2.1645756E-6	45.000004	37
ACTACGA	30	2.1645756E-6	45.000004	35
ACTCGAA	20	7.031851E-4	45.000004	13
GTTCACG	40	6.8102963E-9	45.000004	1