SRR1545433_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545433_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1128173
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6894	0.6110764927010308	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3759	0.3331935793535211	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1406	0.12462627628918614	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACG	20	7.0332305E-4	45.000004	16
AACCCGT	20	7.0332305E-4	45.000004	32
CGTGACC	20	7.0332305E-4	45.000004	27
CCGTGTA	20	7.0332305E-4	45.000004	29
CCGTCGA	20	7.0332305E-4	45.000004	5
CCGTAGA	20	7.0332305E-4	45.000004	2
TCCGTAG	20	7.0332305E-4	45.000004	1
TATAGCG	40	6.8157533E-9	45.000004	1
ACCGTTG	20	7.0332305E-4	45.000004	20
ACGTATC	20	7.0332305E-4	45.000004	22
TAAATCG	20	7.0332305E-4	45.000004	17
CCGTTGA	20	7.0332305E-4	45.000004	21
CGACACT	25	3.89076E-5	45.0	39
ACGGGTA	70	0.0	45.0	5
TCTCGAG	25	3.89076E-5	45.0	1
ACTACGC	25	3.89076E-5	45.0	35
GTACTAC	25	3.89076E-5	45.0	31
CAAATCG	25	3.89076E-5	45.0	1
CCACGTG	75	0.0	45.0	21
GTGCGAC	25	3.89076E-5	45.0	30