##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545424_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1324536 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.277072876841398 31.0 31.0 33.0 30.0 34.0 2 31.624547011179764 31.0 31.0 34.0 30.0 34.0 3 31.731225123363956 31.0 31.0 34.0 30.0 34.0 4 35.4394459644736 37.0 35.0 37.0 33.0 37.0 5 35.29705043879517 37.0 35.0 37.0 33.0 37.0 6 35.36375002264944 37.0 35.0 37.0 33.0 37.0 7 35.81167216293102 37.0 35.0 37.0 35.0 37.0 8 35.837672211249824 37.0 35.0 37.0 35.0 37.0 9 37.50036465600029 39.0 37.0 39.0 35.0 39.0 10 36.885485181225725 39.0 37.0 39.0 32.0 39.0 11 36.51257270470565 39.0 35.0 39.0 32.0 39.0 12 35.77110550411616 37.0 35.0 39.0 31.0 39.0 13 35.42116031576341 37.0 35.0 39.0 30.0 39.0 14 36.403118526034774 38.0 35.0 41.0 31.0 41.0 15 36.638067217501074 38.0 35.0 41.0 31.0 41.0 16 36.80166261996654 38.0 35.0 41.0 32.0 41.0 17 36.75766759076386 38.0 35.0 40.0 32.0 41.0 18 36.68798960541654 38.0 35.0 40.0 31.0 41.0 19 36.62799954097133 38.0 35.0 40.0 31.0 41.0 20 36.4775385493486 38.0 35.0 40.0 31.0 41.0 21 36.284584186462276 38.0 35.0 40.0 31.0 41.0 22 36.21168016573351 38.0 35.0 40.0 30.0 41.0 23 36.14678649730924 37.0 35.0 40.0 30.0 41.0 24 36.06868820477511 37.0 35.0 40.0 30.0 41.0 25 35.93646982792465 37.0 34.0 40.0 30.0 41.0 26 35.840076071922546 37.0 34.0 40.0 30.0 41.0 27 35.76893266774176 37.0 34.0 40.0 30.0 41.0 28 35.761212983263576 37.0 34.0 40.0 30.0 41.0 29 35.77322096190666 37.0 34.0 40.0 30.0 41.0 30 35.683345715027755 37.0 34.0 40.0 30.0 41.0 31 35.528977694830495 37.0 34.0 40.0 29.0 41.0 32 35.33668243067761 37.0 34.0 40.0 29.0 41.0 33 35.155107146955615 37.0 34.0 40.0 27.0 41.0 34 34.975745468601836 36.0 34.0 40.0 27.0 41.0 35 34.824890376705504 36.0 34.0 40.0 26.0 41.0 36 34.63912419141496 36.0 33.0 40.0 25.0 41.0 37 34.55799540367344 36.0 33.0 40.0 25.0 41.0 38 34.54785751387656 36.0 33.0 40.0 25.0 41.0 39 34.45603592503337 36.0 33.0 40.0 24.0 41.0 40 34.31319873525521 36.0 33.0 40.0 24.0 41.0 41 34.2765617544559 36.0 33.0 40.0 24.0 41.0 42 34.17322594478368 35.0 33.0 40.0 24.0 41.0 43 34.11362243079841 35.0 33.0 40.0 23.0 41.0 44 34.03967351585763 35.0 33.0 40.0 23.0 41.0 45 33.995709440891 35.0 33.0 40.0 23.0 41.0 46 33.9555217827224 35.0 33.0 40.0 23.0 41.0 47 33.89039407007435 35.0 33.0 40.0 23.0 41.0 48 33.84531111272174 35.0 33.0 39.0 23.0 41.0 49 33.782353216522615 35.0 33.0 39.0 24.0 41.0 50 33.64055941099374 35.0 33.0 39.0 24.0 41.0 51 33.463959454480666 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 4.0 14 10.0 15 34.0 16 138.0 17 342.0 18 793.0 19 1521.0 20 2600.0 21 4263.0 22 6241.0 23 9000.0 24 12678.0 25 17002.0 26 22355.0 27 26098.0 28 29018.0 29 33293.0 30 39035.0 31 47356.0 32 59059.0 33 75611.0 34 123792.0 35 185183.0 36 98309.0 37 118396.0 38 161876.0 39 250403.0 40 125.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.52927817741458 23.03855840837848 29.62380788442141 14.808355529785524 2 29.69032174285939 26.1616143313583 30.372975894954912 13.775088030827398 3 28.24528740630681 25.416372223933514 32.353292020752924 13.985048349006746 4 26.109067628210937 27.98496983094457 31.190771711754156 14.715190829090337 5 23.663833976577457 31.83537480294986 30.40483610864484 14.095955111827841 6 22.461450651397925 40.316759982363635 26.658241074610277 10.563548291628162 7 85.91816303973619 5.06192357172625 6.954057873851674 2.0658555146858975 8 86.9564889138536 4.016349876485048 6.798909202920872 2.228252006740474 9 81.80683650727501 5.605963144829586 8.995451992244831 3.5917483556505827 10 49.67286657365296 23.097144962462327 15.094493467901213 12.1354949959835 11 42.64927491589508 20.99142643159567 21.165525134839672 15.193773517669584 12 38.07597528492997 20.68256355433148 25.976115409471696 15.26534575126686 13 22.13008932939535 37.02911812136476 24.826278787439527 16.01451376180036 14 16.910903138910534 38.163930614192445 28.02898524464416 16.896181002252863 15 15.82863734923022 22.326006994147384 45.59015383500335 16.255201821619043 16 16.98398533524193 18.56937070793093 43.29040509280231 21.156238864024836 17 17.214934135425537 19.631101004427208 29.269117638176688 33.88484722197056 18 21.16356218328532 22.918893861699495 34.08997565940073 21.827568295614462 19 28.582839575519277 23.656812649863802 25.94433069391847 21.81601708069845 20 31.451617774073338 20.952997880012322 26.590141755301477 21.005242590612863 21 22.862647749853533 27.161889144575913 27.550402556064917 22.425060549505638 22 23.387586294370255 24.80642277748585 24.54255678969843 27.263434138445465 23 21.148236061534 28.719415704820406 24.85647804212192 25.275870191523676 24 20.332856185109353 22.780203784570595 38.19171392850024 18.695226101819806 25 19.33560129735998 24.741494379918706 34.50755585352154 21.41534846919978 26 18.805453381410548 31.43802810946626 27.698303405871943 22.058215103251253 27 19.044329485948285 32.16107376469949 27.907810735231052 20.88678601412117 28 17.14826928071415 27.419186794469912 36.129633320649646 19.30291060416629 29 17.617867691025385 23.18306184203374 34.87311783145192 24.325952635488957 30 19.23571726249796 30.015341221378655 30.563004705043877 20.185936811079504 31 27.958167992413944 27.247806024147327 25.111359751641327 19.6826662317974 32 29.53774000857659 24.71431505070455 26.05591693996992 19.692028000748945 33 28.096631575132726 27.3332699148985 24.57902238972742 19.991076120241352 34 21.067528553395302 25.9951409399216 27.65851588782789 25.278814618855204 35 22.239561627619032 24.40711313244789 30.189515422759367 23.16380981717371 36 30.02432549964667 25.471032874908644 25.056472606256076 19.448169019188608 37 21.565287768697868 31.443312979035674 28.316859639904084 18.674539612362366 38 21.330186570995426 31.358528571514853 25.649963458901837 21.661321398587884 39 21.308292111350692 31.676828715867295 26.525515350281154 20.489363822500863 40 24.56195981083187 25.893142957231813 26.199816388531534 23.345080843404784 41 18.506027771234606 24.79162514269148 27.938387480596976 28.763959605476934 42 21.469254138807855 25.906959116249013 24.657766946311767 27.96601979863137 43 21.81209117758974 25.998613854210078 26.88511297541177 25.304181992788415 44 20.552857755470594 28.88037773227757 28.330826795194696 22.235937717057144 45 18.431737604715913 34.67757765738342 24.03022643401161 22.86045830388906 46 21.869545259622992 32.23430695730429 25.328718887217867 20.56742889585485 47 21.490318118948824 27.83872994014508 27.13131239920999 23.53963954169611 48 22.845132182137746 24.22712557454082 30.359914717304775 22.567827526016657 49 20.973457875059644 25.843842673962808 31.136262057052434 22.046437393925117 50 20.730051882319543 31.390464283341483 27.346104598138517 20.53337923620045 51 19.44794252477849 31.185637838458145 25.465219518382288 23.901200118381077 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 799.0 1 1396.5 2 1994.0 3 5597.5 4 9201.0 5 7000.0 6 4799.0 7 5082.5 8 5366.0 9 5551.5 10 5737.0 11 5915.0 12 6093.0 13 5929.0 14 5765.0 15 5781.5 16 5798.0 17 5520.0 18 5242.0 19 5645.0 20 6048.0 21 5817.0 22 5586.0 23 5735.5 24 5885.0 25 6607.0 26 8538.5 27 9748.0 28 11789.5 29 13831.0 30 16982.0 31 20133.0 32 23929.0 33 27725.0 34 33907.0 35 40089.0 36 42870.0 37 45651.0 38 50119.0 39 54587.0 40 69028.5 41 83470.0 42 96623.5 43 109777.0 44 114318.0 45 118859.0 46 114263.5 47 109668.0 48 104888.0 49 100108.0 50 95507.5 51 90907.0 52 84818.5 53 78730.0 54 72328.5 55 65927.0 56 61496.0 57 57065.0 58 53643.0 59 50221.0 60 47878.0 61 45535.0 62 40815.5 63 36096.0 64 32311.0 65 28526.0 66 24562.5 67 20599.0 68 17747.0 69 14895.0 70 12196.0 71 9497.0 72 8539.5 73 7582.0 74 5917.0 75 3401.5 76 2551.0 77 1987.5 78 1424.0 79 1146.5 80 869.0 81 605.5 82 342.0 83 245.0 84 148.0 85 91.5 86 35.0 87 34.0 88 33.0 89 21.5 90 10.0 91 6.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1324536.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.817487171284025 #Duplication Level Percentage of deduplicated Percentage of total 1 77.54858763023297 15.368181405133369 2 6.938752828537289 2.7501729032849687 3 2.845480120133695 1.6917079733067966 4 1.587402904735102 1.2583334680098752 5 1.0294223198015884 1.0200281808250709 6 0.6696524401817527 0.7962497185512556 7 0.5057713381543649 0.7016181903834098 8 0.40348318414064593 0.6396818260428865 9 0.34315798783170415 0.6120476119420593 >10 5.413530840102876 27.734289533387326 >50 1.986754919183166 27.56895672806078 >100 0.7253171272343483 18.88213956616408 >500 0.0015350627031414771 0.19218520718268953 >1k 0.001151297027356108 0.7844076877254689 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5000 0.3774906835299305 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2949 0.22264400514595298 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2365 0.17855309330965713 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.024838886976269427 0.0 2 0.0 0.0 0.0 0.08501090193094034 0.0 3 0.0 0.0 0.0 0.12208048705357952 0.0 4 0.0 0.0 0.0 0.21048880513628923 0.0 5 0.0 0.0 0.0 0.36156057668496744 0.0 6 0.0 0.0 0.0 0.575144805426202 0.0 7 0.0 0.0 0.0 0.7257635881546444 0.0 8 7.549813670598609E-5 0.0 0.0 1.1159379586511804 0.0 9 7.549813670598609E-5 0.0 0.0 1.2852802792827074 0.0 10 1.5099627341197218E-4 0.0 0.0 1.5586590322950828 0.0 11 2.264944101179583E-4 0.0 0.0 1.7555581728242946 0.0 12 2.264944101179583E-4 0.0 0.0 1.9527593059003303 0.0 13 2.264944101179583E-4 0.0 0.0 2.030748881117614 0.0 14 2.264944101179583E-4 0.0 0.0 2.0597401656127126 0.0 15 2.264944101179583E-4 0.0 0.0 2.102396612851595 0.0 16 2.264944101179583E-4 0.0 0.0 2.179706704838525 0.0 17 2.264944101179583E-4 0.0 0.0 2.270228970749002 0.0 18 2.264944101179583E-4 0.0 0.0 2.4085415571943685 0.0 19 2.264944101179583E-4 0.0 0.0 2.469619549789511 0.0 20 2.264944101179583E-4 0.0 0.0 2.535378426860425 0.0 21 2.264944101179583E-4 0.0 0.0 2.627561651778434 0.0 22 3.0199254682394437E-4 0.0 0.0 2.722311813344447 0.0 23 3.774906835299305E-4 0.0 0.0 2.846053259405558 0.0 24 3.774906835299305E-4 0.0 0.0 2.936651023452741 0.0 25 4.529888202359166E-4 0.0 0.0 3.0090537365537817 0.0 26 5.284869569419027E-4 0.0 0.0 3.0774550484094054 0.0 27 5.284869569419027E-4 0.0 0.0 3.145705363991617 0.0 28 5.284869569419027E-4 0.0 0.0 3.214182173983946 0.0 29 5.284869569419027E-4 0.0 0.0 3.300401046102182 0.0 30 6.039850936478887E-4 0.0 0.0 3.4070799132677405 0.0 31 6.039850936478887E-4 0.0 0.0 3.502962546884343 0.0 32 6.039850936478887E-4 0.0 0.0 3.5865389842178694 0.0 33 6.039850936478887E-4 0.0 0.0 3.6737393321132834 0.0 34 6.039850936478887E-4 0.0 0.0 3.763884107340231 0.0 35 6.039850936478887E-4 0.0 0.0 3.8916269546467595 0.0 36 6.039850936478887E-4 0.0 0.0 3.997399844171846 0.0 37 6.039850936478887E-4 0.0 0.0 4.097434875307277 0.0 38 6.039850936478887E-4 0.0 0.0 4.197016917622473 0.0 39 6.039850936478887E-4 0.0 0.0 4.303016301557678 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTACG 20 7.033676E-4 45.000004 1 TGTTACG 20 7.033676E-4 45.000004 1 CCACGAA 40 6.8157533E-9 45.000004 26 AATACGC 20 7.033676E-4 45.000004 30 ACGTTAG 50 2.1827873E-11 45.0 1 TCGTCAA 25 3.891129E-5 45.0 1 GCGATAT 160 0.0 42.187504 9 CGCGATT 70 0.0 41.785713 27 GAACGTA 70 0.0 41.785713 20 CGTAAGG 230 0.0 41.086956 2 GTCGACA 50 1.0822987E-9 40.5 21 TGTCGAC 50 1.0822987E-9 40.5 20 TAATGCG 100 0.0 40.5 1 CGTTTTT 4090 0.0 40.213936 1 TAACGGG 275 0.0 40.090908 3 TAGATCG 45 1.9286745E-8 40.0 1 ACGTAAG 45 1.9286745E-8 40.0 1 ATAACGG 85 0.0 39.705883 2 AACGGGA 330 0.0 39.545456 4 GCGTAAG 110 0.0 38.86364 1 >>END_MODULE