SRR1545423_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545423_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	5001419
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25750	0.5148538844675881	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	18038	0.36065764536024675	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	7537	0.15069723212552277	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5077	0.10151119112395902	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	130	0.0	45.000004	1
CGTGCTA	65	0.0	45.000004	19
TACGCCC	20	7.0355565E-4	45.000004	35
TACGATA	20	7.0355565E-4	45.000004	27
CGCTAAG	35	1.2130295E-7	45.000004	28
GTACGAC	35	1.2130295E-7	45.000004	34
CTTACCG	20	7.0355565E-4	45.000004	1
GGTACGA	25	3.8926883E-5	45.0	7
CGAATCG	25	3.8926883E-5	45.0	36
TATAGCG	600	0.0	42.750004	1
TATATCG	85	0.0	42.35294	1
AATACGG	455	0.0	42.032967	2
TACCTAG	150	0.0	42.000004	1
ACGTAAG	150	0.0	42.000004	1
GCGTAAT	75	0.0	42.000004	8
AGTAACG	290	0.0	41.896553	1
GCGAAGT	65	0.0	41.538464	28
ATGCGTC	60	3.6379788E-12	41.250004	43
CGTTTTT	19685	0.0	40.816612	1
CCACGTA	45	1.9304935E-8	40.0	11