##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545418_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1770351 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.246938601441183 31.0 31.0 33.0 30.0 34.0 2 31.61143637617625 31.0 31.0 34.0 30.0 34.0 3 31.67271461986917 31.0 31.0 34.0 30.0 34.0 4 35.42935214542201 37.0 35.0 37.0 33.0 37.0 5 35.30724867554513 37.0 35.0 37.0 33.0 37.0 6 35.371864110563386 37.0 35.0 37.0 33.0 37.0 7 35.794354904761825 37.0 35.0 37.0 35.0 37.0 8 35.80943270571768 37.0 35.0 37.0 35.0 37.0 9 37.45392862771281 39.0 37.0 39.0 35.0 39.0 10 36.854337925078134 39.0 37.0 39.0 32.0 39.0 11 36.54961078339832 39.0 35.0 39.0 32.0 39.0 12 36.12154877761529 38.0 35.0 39.0 31.0 39.0 13 35.93312060715643 38.0 35.0 39.0 31.0 39.0 14 36.997614032471525 39.0 35.0 41.0 31.0 41.0 15 37.09450442313417 39.0 35.0 41.0 31.0 41.0 16 37.16003549578586 39.0 35.0 41.0 32.0 41.0 17 37.09553868131235 39.0 35.0 41.0 32.0 41.0 18 36.94102920833213 38.0 35.0 40.0 31.0 41.0 19 36.858585105439545 38.0 35.0 40.0 31.0 41.0 20 36.712192102018186 38.0 35.0 40.0 31.0 41.0 21 36.532086010062415 38.0 35.0 40.0 31.0 41.0 22 36.462635375696685 38.0 35.0 40.0 31.0 41.0 23 36.364834431138235 38.0 35.0 40.0 30.0 41.0 24 36.28507906059307 38.0 35.0 40.0 30.0 41.0 25 36.158350519190826 38.0 35.0 40.0 30.0 41.0 26 36.07111810030892 38.0 35.0 40.0 30.0 41.0 27 36.032412781420184 38.0 35.0 40.0 30.0 41.0 28 35.950640861614445 38.0 35.0 40.0 30.0 41.0 29 35.890220639861816 38.0 35.0 40.0 30.0 41.0 30 35.760768909668194 38.0 34.0 40.0 29.0 41.0 31 35.57719909780603 38.0 34.0 40.0 29.0 41.0 32 35.361992621802116 38.0 34.0 40.0 27.0 41.0 33 35.09549631683208 38.0 34.0 40.0 26.0 41.0 34 34.807543814757636 37.0 34.0 40.0 24.0 41.0 35 34.607791901154066 37.0 33.0 40.0 24.0 41.0 36 34.46191461467246 37.0 33.0 40.0 23.0 41.0 37 34.402007285560884 37.0 33.0 40.0 23.0 41.0 38 34.32891443561192 37.0 33.0 40.0 23.0 41.0 39 34.21892325307241 37.0 33.0 40.0 23.0 41.0 40 34.06329083893533 37.0 33.0 40.0 23.0 41.0 41 33.9575095560146 36.0 33.0 40.0 22.0 41.0 42 33.8478940052001 36.0 33.0 40.0 22.0 41.0 43 33.76699027480991 36.0 33.0 40.0 22.0 41.0 44 33.68922546997742 36.0 33.0 40.0 21.0 41.0 45 33.647164884251765 36.0 33.0 40.0 22.0 41.0 46 33.606531134221406 36.0 33.0 40.0 22.0 41.0 47 33.53418672342377 35.0 32.0 40.0 21.0 41.0 48 33.45503857709573 35.0 32.0 40.0 21.0 41.0 49 33.37184547019207 35.0 32.0 40.0 20.0 41.0 50 33.249407603350974 35.0 32.0 39.0 20.0 41.0 51 33.0836811457163 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 3.0 13 9.0 14 20.0 15 64.0 16 213.0 17 548.0 18 1191.0 19 2316.0 20 3970.0 21 6230.0 22 9334.0 23 13062.0 24 18669.0 25 26594.0 26 35718.0 27 40696.0 28 43308.0 29 46137.0 30 52335.0 31 62033.0 32 74306.0 33 93618.0 34 140074.0 35 191180.0 36 143199.0 37 175719.0 38 239837.0 39 349849.0 40 117.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.82942196208548 22.555188208440022 27.412812487467175 17.20257734200732 2 34.96402690765842 24.27942255518821 27.84809340068721 12.90845713646616 3 28.627373893651598 24.49502951674555 33.02249102014233 13.855105569460518 4 25.851653146748866 26.820161651559495 32.5837079765538 14.744477225137839 5 22.758311769812877 30.734244226144984 31.799456717905095 14.707987286137042 6 22.24163456851212 38.221234094255884 29.42320477690582 10.113926560326172 7 82.72421683609635 4.720419848945209 10.297675432724922 2.2576878822335233 8 83.41249842545349 3.7649031180822337 10.431773134254167 2.3908253222101155 9 77.8995803657015 5.80048815178459 12.296262153663314 4.003669328850607 10 42.23388469292247 24.18938391313361 19.56233537869044 14.014396015253471 11 34.643525492967214 24.290154890188443 25.5395116561631 15.526807960681243 12 31.074572217599787 21.964344923690273 29.904408786732123 17.056674071977817 13 22.824569816945907 28.08313153719234 30.72091353635522 18.371385109506534 14 19.98982122754188 30.217510538870542 31.925420439223632 17.86724779436394 15 19.60650741011246 22.860155980367736 40.18039360556184 17.35294300395797 16 21.42642899628379 21.051475102959806 38.48530602123534 19.036789879521066 17 21.555160530312914 21.084971285355277 31.434387869976067 25.92548031435574 18 23.664064357858976 22.6728484916268 33.44528853317789 20.217798617336335 19 27.722242651316037 23.497374249513232 28.866930908051568 19.913452191119163 20 29.675132219542906 22.608341509678024 28.622290156019908 19.094236114759163 21 25.321023909947804 25.170714733970833 29.847640383178252 19.660620972903114 22 24.600827745458385 23.3154894142461 29.409309227379204 22.67437361291631 23 23.02820175208193 25.654178182744552 29.24855014627043 22.069069918903086 24 22.486557750412207 23.24222710637608 34.54292397383344 19.728291169378277 25 21.86781039466185 24.09465693526312 32.72085592066206 21.31667674941297 26 20.36070813076051 28.431311078989417 29.845606888125577 21.362373902124492 27 20.605913742529026 27.72207319339498 30.9456712256496 20.72634183842639 28 20.422164870130274 26.05618885746386 33.68168233305147 19.839963939354398 29 20.89585624545641 24.24790338187173 33.77821686207989 21.07802351059197 30 22.123409425588488 26.139618640597263 31.128346864548327 20.608625069265926 31 25.37338640755421 25.047405853415512 29.411342722431876 20.167865016598405 32 26.86246964584989 25.2340919964459 28.69786838881103 19.205569968893172 33 26.524740009184622 25.60667347887509 27.741504368342774 20.127082143597512 34 22.11578381914095 26.39256283076068 29.457491762932886 22.03416158716548 35 22.88760816357886 25.788614800115912 29.832841058072663 21.490935978232564 36 26.348729715180774 26.533099933290067 26.95476772685191 20.163402624677254 37 22.921160831948015 29.061920489213723 28.476160942095664 19.540757736742602 38 22.74029274420722 28.822194016892695 27.152694578645704 21.28481866025438 39 23.384628246037085 28.553829155913153 27.31689930414929 20.744643293900474 40 24.578176870010523 26.0230315909105 27.569730522365337 21.829061016713634 41 20.63771534571393 25.640395605165306 29.06056482584527 24.661324223275496 42 22.419734843542326 26.3851066822342 26.957761483457237 24.23739699076624 43 22.45678964227998 25.925536800329425 28.130579755088114 23.487093802302482 44 21.781782256738918 27.66942826592015 28.61025864362491 21.938530833716026 45 20.576541036212593 29.898647217416208 26.914719171508928 22.61009257486227 46 21.80386827244993 29.196526564506136 27.466417676494657 21.533187486549277 47 22.257563613091417 27.510024848179825 28.429221097963058 21.8031904407657 48 22.43984385017434 25.73269368616732 30.099285395946907 21.72817706771143 49 22.025462747217926 26.01478463875243 29.771497290650274 22.188255323379373 50 20.892184657166858 29.06417992816114 28.426340313305104 21.617295101366903 51 20.54643401223825 29.45076993206432 27.570238896128508 22.432557159568923 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1116.0 1 2050.5 2 2985.0 3 15025.0 4 27065.0 5 19686.0 6 12307.0 7 12319.5 8 12332.0 9 12911.0 10 13490.0 11 13474.0 12 13458.0 13 13202.5 14 12947.0 15 12625.5 16 12304.0 17 11665.5 18 11027.0 19 10592.0 20 10157.0 21 10123.0 22 10089.0 23 10129.5 24 10170.0 25 11624.5 26 14739.5 27 16400.0 28 18835.5 29 21271.0 30 24131.0 31 26991.0 32 31649.0 33 36307.0 34 43215.0 35 50123.0 36 53425.5 37 56728.0 38 61319.5 39 65911.0 40 78295.0 41 90679.0 42 102575.5 43 114472.0 44 118428.5 45 122385.0 46 123549.0 47 124713.0 48 121984.0 49 119255.0 50 115546.5 51 111838.0 52 107681.5 53 103525.0 54 98265.5 55 93006.0 56 90139.5 57 87273.0 58 84828.0 59 82383.0 60 78532.0 61 74681.0 62 67910.0 63 61139.0 64 54823.0 65 48507.0 66 41236.0 67 33965.0 68 28861.0 69 23757.0 70 20130.5 71 16504.0 72 13629.0 73 10754.0 74 9026.0 75 5635.0 76 3972.0 77 3065.0 78 2158.0 79 1557.5 80 957.0 81 696.5 82 436.0 83 355.5 84 275.0 85 178.5 86 82.0 87 66.5 88 51.0 89 36.0 90 21.0 91 12.5 92 4.0 93 3.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1770351.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.888332963257977 #Duplication Level Percentage of deduplicated Percentage of total 1 75.5301363322385 17.287589091325433 2 5.790362672962885 2.6506349767358994 3 2.6126587087959448 1.7939820733883176 4 1.6875095945607144 1.544971259159924 5 1.1353970513281955 1.299367287815052 6 0.9067005182775547 1.245171801617715 7 0.7793876251330328 1.2487218430041422 8 0.648321333821538 1.187119564455271 9 0.6202119161808303 1.2776055160794382 >10 9.00161402768366 48.70626337369115 >50 1.2113692924025248 18.099167067373923 >100 0.07483424201361187 2.470987059647137 >500 7.483423005286125E-4 0.13788287734716426 >1k 4.988948670190751E-4 0.18350127030798588 >5k 0.0 0.0 >10k+ 2.4944743350953754E-4 0.8670349380513609 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15186 0.8577959963871571 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2034 0.11489247047619372 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02112575415835617 0.0 2 0.0 0.0 0.0 0.06552372947511538 0.0 3 0.0 0.0 0.0 0.10625011650232073 0.0 4 0.0 0.0 0.0 0.15957287566138015 0.0 5 0.0 0.0 0.0 0.2903379047431837 0.0 6 0.0 0.0 0.0 0.5228906584061579 0.0 7 0.0 0.0 0.0 0.652582453987938 0.0 8 0.0 0.0 0.0 0.8910662348878838 0.0 9 0.0 0.0 0.0 1.0418272986543347 0.0 10 0.0 0.0 0.0 1.2378901133165119 0.0 11 0.0 0.0 0.0 1.3821552901091365 0.0 12 0.0 0.0 0.0 1.4970477605853303 0.0 13 0.0 0.0 0.0 1.5579396402182393 0.0 14 0.0 0.0 0.0 1.5877642343241538 0.0 15 0.0 0.0 0.0 1.6233503977459838 0.0 16 0.0 0.0 0.0 1.68452470724732 0.0 17 0.0 0.0 0.0 1.7479019697223883 0.0 18 0.0 0.0 0.0 1.8317271546715876 0.0 19 0.0 0.0 0.0 1.8802486060673844 0.0 20 0.0 0.0 0.0 1.9319897579632515 0.0 21 0.0 0.0 0.0 1.9996034684647281 0.0 22 0.0 0.0 0.0 2.0752946732032234 0.0 23 5.6485973685444296E-5 0.0 0.0 2.1579336527050286 0.0 24 5.6485973685444296E-5 0.0 0.0 2.2259427650223036 0.0 25 5.6485973685444296E-5 0.0 0.0 2.2861003269973015 0.0 26 5.6485973685444296E-5 0.0 0.0 2.347444094419694 0.0 27 5.6485973685444296E-5 0.0 0.0 2.411499188578988 0.0 28 1.1297194737088859E-4 0.0 0.0 2.4779266936330706 0.0 29 1.1297194737088859E-4 0.0 0.0 2.5529400666873405 0.0 30 1.1297194737088859E-4 0.0 0.0 2.6474975866367743 0.0 31 1.1297194737088859E-4 5.6485973685444296E-5 0.0 2.7261825479805983 0.0 32 1.1297194737088859E-4 5.6485973685444296E-5 0.0 2.8123236578509005 0.0 33 1.1297194737088859E-4 5.6485973685444296E-5 0.0 2.893832917878997 0.0 34 1.1297194737088859E-4 5.6485973685444296E-5 0.0 2.9844364196704496 0.0 35 1.1297194737088859E-4 5.6485973685444296E-5 0.0 3.0834563315410333 0.0 36 1.1297194737088859E-4 5.6485973685444296E-5 0.0 3.1695409554376504 0.0 37 1.1297194737088859E-4 5.6485973685444296E-5 0.0 3.2643809052555115 0.0 38 1.1297194737088859E-4 5.6485973685444296E-5 0.0 3.3711958814946867 0.0 39 1.1297194737088859E-4 5.6485973685444296E-5 0.0 3.5077224798924056 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCGA 20 7.034321E-4 45.0 18 CGTTTTT 11240 0.0 41.817173 1 ATAACGG 135 0.0 38.333332 2 TATACGC 30 1.1401711E-4 37.499996 44 ATAGGGC 905 0.0 37.292816 4 CGTTCGG 400 0.0 37.125 45 TATGACG 110 0.0 36.81818 1 AGGGCGA 2155 0.0 36.542923 6 GGGCGAT 3985 0.0 36.53074 7 ACGGGAT 425 0.0 36.52941 5 CGCGACC 345 0.0 36.52174 10 CGACCCG 310 0.0 36.29032 32 CGTACAC 25 0.0021074156 36.0 37 GTTTTTT 14195 0.0 35.648117 2 TACGGGT 165 0.0 35.454544 4 ATGACGG 275 0.0 35.18182 2 TACGGGA 355 0.0 34.859158 4 CTAAGCG 110 0.0 34.772728 1 GGCGATA 880 0.0 34.772728 8 AATACGA 65 3.6743586E-10 34.615383 27 >>END_MODULE