SRR1545417_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545417_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	194059
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	664	0.34216398105730733	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	596	0.30712309143095656	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	421	0.21694433136314212	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	209	0.10769920488098982	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTGCG	30	2.1561518E-6	45.000004	1
TTACGGG	30	2.1561518E-6	45.000004	3
ATAGTTA	55	1.8189894E-12	45.000004	37
TGGTATG	30	2.1561518E-6	45.000004	1
CTAGCGG	30	2.1561518E-6	45.000004	2
AAGTACA	25	3.8787897E-5	45.0	44
ACTGCGG	25	3.8787897E-5	45.0	2
ATGTGCG	20	7.018785E-4	45.0	1
CGTTCGG	20	7.018785E-4	45.0	45
TCTAGCG	25	3.8787897E-5	45.0	1
AAAGTAG	20	7.018785E-4	45.0	1
TGGCACA	20	7.018785E-4	45.0	22
GTTAACA	20	7.018785E-4	45.0	9
CTACGAA	50	2.1827873E-11	45.0	11
CTTGCGG	20	7.018785E-4	45.0	2
ATGACGG	20	7.018785E-4	45.0	2
GCGATAT	25	3.8787897E-5	45.0	9
TAAGGTT	20	7.018785E-4	45.0	1
TACTAAG	20	7.018785E-4	45.0	1
TGGGCAC	25	3.8787897E-5	45.0	6