SRR1545415_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545415_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1620238
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7006	0.43240560954625185	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5506	0.33982661806475345	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1990	0.1228214620321212	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1883	0.11621749397310766	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATTCG	30	2.1660544E-6	45.000004	1
CGATATC	30	2.1660544E-6	45.000004	10
TCGTTAG	100	0.0	45.0	1
ACACGAA	20	7.034144E-4	45.0	42
CGTATGA	45	3.8562575E-10	45.0	15
GTCGAAA	35	1.2123382E-7	45.0	39
CGCATCG	20	7.034144E-4	45.0	45
ATTACCG	20	7.034144E-4	45.0	1
CACGCTA	20	7.034144E-4	45.0	15
CTAAGCG	35	1.2123382E-7	45.0	1
CGCGAAC	20	7.034144E-4	45.0	28
GCGCATC	35	1.2123382E-7	45.0	21
GCGTTAG	50	2.1827873E-11	45.0	1
CGTTAGT	40	6.8175723E-9	45.0	21
GTAGCAC	20	7.034144E-4	45.0	33
CGCTAAG	35	1.2123382E-7	45.0	42
ACGTCTT	35	1.2123382E-7	45.0	34
CTATTAG	50	2.1827873E-11	45.0	1
ACCGTAT	25	3.8915154E-5	45.0	20
CCGCGAA	20	7.034144E-4	45.0	27