SRR1545409_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545409_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1079871
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3452	0.3196678121738615	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2666	0.24688134045640636	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	25	3.890648E-5	45.000004	9
GTCCTAT	20	7.033095E-4	45.000004	9
CCGCTAT	20	7.033095E-4	45.000004	37
CGTTAGA	30	2.1653796E-6	45.000004	14
TGTTGCG	25	3.890648E-5	45.000004	1
CTAACCG	25	3.890648E-5	45.000004	1
CGGATGA	25	3.890648E-5	45.000004	6
TACGACT	20	7.033095E-4	45.000004	40
ACGTGCG	25	3.890648E-5	45.000004	1
CTCGCTA	20	7.033095E-4	45.000004	36
CGTCGGT	20	7.033095E-4	45.000004	23
TTACGCG	20	7.033095E-4	45.000004	1
CCGAACT	20	7.033095E-4	45.000004	21
GCTACGT	20	7.033095E-4	45.000004	29
CAATCGA	20	7.033095E-4	45.000004	43
TGTAACG	50	2.1827873E-11	45.000004	1
TGTCGGT	20	7.033095E-4	45.000004	11
CAATACG	20	7.033095E-4	45.000004	1
CGTATTA	55	1.8189894E-12	45.0	35
TATAGCG	70	0.0	45.0	1