SRR1545408_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545408_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1456371
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5475	0.3759344287959593	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4165	0.2859848211753736	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1736	0.11920039605292881	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1685	0.11569854109976098	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	25	3.891321E-5	45.0	16
CGTATTG	20	7.033908E-4	45.0	35
CTATTCG	20	7.033908E-4	45.0	44
ACCAACG	20	7.033908E-4	45.0	1
ACGTTAC	30	2.1659034E-6	44.999996	20
CCGACGG	45	1.9288564E-8	40.0	2
TTCGAAG	90	0.0	40.0	1
TTATACG	40	3.459063E-7	39.375	1
CGACTCG	40	3.459063E-7	39.375	3
CAATCGA	40	3.459063E-7	39.375	17
TAGTCCC	40	3.459063E-7	39.375	28
TCGAACG	40	3.459063E-7	39.375	1
TTACGGG	470	0.0	39.255318	3
TAGTGCG	115	0.0	39.130432	1
CGAATAT	215	0.0	38.720932	14
CGGCTAC	605	0.0	38.67769	25
CGTTTTT	4625	0.0	38.57838	1
CGTTACA	35	6.2494382E-6	38.571426	21
GACGGGA	340	0.0	38.38235	4
GCGGCTA	610	0.0	38.360657	24