##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545408_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1456371 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.254912381529156 31.0 31.0 33.0 30.0 34.0 2 31.59601639966739 31.0 31.0 34.0 30.0 34.0 3 31.699527798891904 31.0 31.0 34.0 30.0 34.0 4 35.40252861393148 37.0 35.0 37.0 33.0 37.0 5 35.261423771827374 37.0 35.0 37.0 33.0 37.0 6 35.32917367895955 37.0 35.0 37.0 32.0 37.0 7 35.798232730533634 37.0 35.0 37.0 35.0 37.0 8 35.81971558071398 37.0 35.0 37.0 35.0 37.0 9 37.44275256785531 39.0 37.0 39.0 35.0 39.0 10 36.8081615192832 39.0 37.0 39.0 32.0 39.0 11 36.46829619650487 39.0 35.0 39.0 32.0 39.0 12 35.770449287990495 37.0 35.0 39.0 31.0 39.0 13 35.45245133279913 37.0 35.0 39.0 30.0 39.0 14 36.439427865564475 38.0 35.0 40.0 31.0 41.0 15 36.647512893349294 38.0 35.0 41.0 31.0 41.0 16 36.8069516627288 38.0 35.0 41.0 32.0 41.0 17 36.77106726239399 38.0 35.0 41.0 32.0 41.0 18 36.693699613628674 38.0 35.0 40.0 31.0 41.0 19 36.65352097782777 38.0 35.0 40.0 31.0 41.0 20 36.511387551660945 38.0 35.0 40.0 31.0 41.0 21 36.313329501892035 38.0 35.0 40.0 31.0 41.0 22 36.23954953785814 38.0 35.0 40.0 30.0 41.0 23 36.1722109270234 38.0 35.0 40.0 30.0 41.0 24 36.0780007292098 37.0 34.0 40.0 30.0 41.0 25 35.943004220765175 37.0 34.0 40.0 30.0 41.0 26 35.8669604104998 37.0 34.0 40.0 30.0 41.0 27 35.82067756086876 37.0 34.0 40.0 30.0 41.0 28 35.78917322577832 37.0 34.0 40.0 30.0 41.0 29 35.81192841659165 37.0 34.0 40.0 30.0 41.0 30 35.73802417103884 37.0 34.0 40.0 30.0 41.0 31 35.58781313278004 37.0 34.0 40.0 29.0 41.0 32 35.41404765681272 37.0 34.0 40.0 29.0 41.0 33 35.26893010091522 37.0 34.0 40.0 28.0 41.0 34 35.10533854354419 37.0 34.0 40.0 27.0 41.0 35 34.98109616299693 37.0 34.0 40.0 27.0 41.0 36 34.82159284962417 37.0 34.0 40.0 25.0 41.0 37 34.762248081017816 37.0 33.0 40.0 25.0 41.0 38 34.72563378424866 36.0 33.0 40.0 26.0 41.0 39 34.65118640785899 36.0 33.0 40.0 25.0 41.0 40 34.47148631770339 36.0 33.0 40.0 24.0 41.0 41 34.42617368788585 36.0 33.0 40.0 24.0 41.0 42 34.35804200989995 36.0 33.0 40.0 24.0 41.0 43 34.29601111255305 36.0 33.0 40.0 24.0 41.0 44 34.23798674925551 35.0 33.0 40.0 24.0 41.0 45 34.202960646703346 35.0 33.0 40.0 24.0 41.0 46 34.161355176668586 35.0 33.0 40.0 24.0 41.0 47 34.102120956816634 35.0 33.0 40.0 23.0 41.0 48 34.03616180217816 35.0 33.0 40.0 23.0 41.0 49 33.99950424720075 36.0 33.0 40.0 24.0 41.0 50 33.85907368383468 35.0 33.0 39.0 24.0 41.0 51 33.697544787694895 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 8.0 13 6.0 14 18.0 15 35.0 16 162.0 17 371.0 18 837.0 19 1704.0 20 2837.0 21 4613.0 22 6727.0 23 9538.0 24 13235.0 25 18196.0 26 23613.0 27 27751.0 28 31625.0 29 36884.0 30 43246.0 31 52555.0 32 63960.0 33 81353.0 34 132889.0 35 197838.0 36 107270.0 37 128979.0 38 179452.0 39 290513.0 40 152.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.76255088847554 23.881277504152447 28.375393357873786 13.980778249498238 2 31.41266888725469 26.003813588707825 29.022755877451555 13.56076164658593 3 29.523452471931943 25.062569908354398 31.282962926342258 14.1310146933714 4 26.607643244750136 27.976525212325704 30.538166442479287 14.877665100444872 5 23.37371452741094 32.37890619903857 29.28621896481048 14.961160308740013 6 21.854184133026543 40.915879264280875 26.87975797375806 10.350178628934522 7 84.91545080202778 5.532724834537354 7.317022928910284 2.234801434524582 8 85.75960383720907 4.549596222391136 7.186836321239574 2.5039636191602277 9 80.09051265096599 6.553618549119696 9.477804762660064 3.8780640372542434 10 47.92734818257161 23.43722856332624 16.023595636002092 12.611827618100058 11 42.43080918255033 22.714061183585777 20.966498234309803 13.888631399554097 12 37.07873886530287 22.316222995376865 25.603846821997966 15.001191317322304 13 22.34258990325954 36.145322860727106 26.00607949485399 15.506007741159362 14 17.2817228577059 38.58906830745737 27.743823517496573 16.385385317340155 15 16.369043327558703 24.139110158057253 43.987212049676906 15.504634464707138 16 17.41547998415239 20.234679212920334 43.12397047180973 19.22587033111755 17 17.8435302543102 20.937247445877457 29.334626959751326 31.88459534006102 18 21.331927098246258 24.536605027153108 33.3041512087236 20.82731666587703 19 29.109821604522473 24.741223218534287 26.19785755140689 19.951097625536352 20 31.251240240295914 22.552563872804388 25.945380675665746 20.25081521123395 21 23.51042419822971 27.299499921379923 27.55170214183062 21.63837373855975 22 23.02112579830277 26.00539285662788 25.310240316512754 25.663241028556598 23 21.246577966740617 29.65439438165138 25.906654279713067 23.192373371894938 24 20.93862072232968 23.817626140591923 36.573785113820584 18.66996802325781 25 19.018024940073648 25.626986530217916 33.81658931687049 21.538399212837938 26 18.151830817834192 33.06149325961585 28.612970184108306 20.173705738441647 27 20.041047233156934 32.44132161379209 28.58042353219063 18.937207620860345 28 17.060282029784993 29.303659575753706 35.20195060187274 18.434107792588563 29 18.47743466465619 24.741223218534287 35.156701142772 21.624640974037522 30 19.70521247676588 29.853588131046276 30.021196522040057 20.420002870147787 31 26.80093190540048 27.636021315997088 25.9999684146416 19.56307836396083 32 28.118247342195087 26.150410849982592 27.69108970173122 18.0402521060911 33 26.72553902817345 27.913766478459127 25.6361188186252 19.72457567474222 34 20.199797991033876 27.383750431723787 28.17537564260755 24.241075934634786 35 21.243900077658783 25.577067931179627 30.126664153570758 23.052367837590833 36 27.644947612936537 26.602287466586468 26.530121789022164 19.222643131454827 37 20.618715972784408 32.438437733242424 28.84642718098616 18.096419112987007 38 21.17654086767726 31.372225895736733 25.33894179436421 22.112291442221796 39 21.733129813763114 30.978507536884486 27.036929463714948 20.251433185637453 40 24.109996697270134 26.42266290663574 26.980213146238153 22.48712724985598 41 18.26546944425562 25.860718182386215 28.22261635256401 27.65119602079415 42 21.316546401981363 26.425409459540184 25.95348300673386 26.30456113174459 43 22.301528937338084 26.917729067662016 26.771887108435973 24.00885488656393 44 20.568522718455668 29.817676951820655 28.131018813200757 21.48278151652292 45 18.62464990033446 34.4684836487406 24.230501705952673 22.676364744972265 46 21.431008994274123 32.833117385611224 25.738427914315785 19.997445705798867 47 22.650341156202643 27.470472839681648 26.968402968749032 22.910783035366673 48 22.853792062599435 24.510444110738266 30.466550075495874 22.169213751166428 49 20.917540928788064 25.860237535627938 30.78851473971948 22.433706795864516 50 19.521468087458484 32.37629697377935 27.106417252197414 20.995817686564756 51 19.570356729157613 32.06284662355952 25.276869698723747 23.089926948559125 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 749.0 1 1458.0 2 2167.0 3 6017.5 4 9868.0 5 7493.5 6 5119.0 7 5250.5 8 5382.0 9 5750.5 10 6119.0 11 6416.0 12 6713.0 13 6629.0 14 6545.0 15 6761.5 16 6978.0 17 6484.5 18 5991.0 19 5962.5 20 5934.0 21 6372.0 22 6810.0 23 6828.5 24 6847.0 25 8270.0 26 11005.0 27 12317.0 28 16457.0 29 20597.0 30 23319.0 31 26041.0 32 29439.0 33 32837.0 34 37034.0 35 41231.0 36 42939.5 37 44648.0 38 53681.5 39 62715.0 40 79430.0 41 96145.0 42 113538.5 43 130932.0 44 137656.0 45 144380.0 46 138933.0 47 133486.0 48 122766.0 49 112046.0 50 105742.5 51 99439.0 52 90890.5 53 82342.0 54 75042.5 55 67743.0 56 63921.5 57 60100.0 58 55881.0 59 51662.0 60 49007.0 61 46352.0 62 40748.5 63 35145.0 64 29554.0 65 23963.0 66 20364.5 67 16766.0 68 14047.5 69 11329.0 70 9314.5 71 7300.0 72 6190.5 73 5081.0 74 4215.5 75 2516.5 76 1683.0 77 1326.5 78 970.0 79 744.0 80 518.0 81 351.5 82 185.0 83 125.5 84 66.0 85 42.0 86 18.0 87 23.5 88 29.0 89 17.5 90 6.0 91 16.5 92 27.0 93 14.5 94 2.0 95 3.0 96 4.0 97 2.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1456371.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.936763497729938 #Duplication Level Percentage of deduplicated Percentage of total 1 78.39082389593047 15.628593164053624 2 6.856338263369604 2.7338638883447244 3 2.531956295844195 1.5143704157050217 4 1.4365046550290665 1.1455701428281053 5 0.9154610117646093 0.912566484147179 6 0.6569543668382816 0.7858526304273442 7 0.5021196343793857 0.7007448278731908 8 0.42411653153243456 0.6764408787711735 9 0.3441469231236004 0.6175058233308001 >10 5.231091436905739 25.89728962911066 >50 1.9130805929097674 26.903902110351787 >100 0.7939318547154801 21.267385518231595 >500 0.001737268828698997 0.24175591403285646 >1k 0.0013898150629591975 0.5948996532132296 >5k 3.474537657397994E-4 0.3792589195787648 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5475 0.3759344287959593 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4165 0.2859848211753736 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1736 0.11920039605292881 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1685 0.11569854109976098 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.046485407907737794 0.0 2 0.0 0.0 0.0 0.14865717595310535 0.0 3 0.0 0.0 0.0 0.21354448832062708 0.0 4 0.0 0.0 0.0 0.3381006625372244 0.0 5 0.0 0.0 0.0 0.5907148659235868 0.0 6 0.0 0.0 0.0 0.8955822383170222 0.0 7 0.0 0.0 0.0 1.07465748768686 0.0 8 0.0 0.0 0.0 1.5281133722107898 0.0 9 0.0 0.0 0.0 1.7186554799566869 0.0 10 0.0 0.0 0.0 2.040894799470739 0.0 11 0.0 0.0 0.0 2.30126801481216 0.0 12 0.0 0.0 0.0 2.5196189707155665 0.0 13 6.866382261113411E-5 0.0 0.0 2.6102552165622632 0.0 14 6.866382261113411E-5 0.0 0.0 2.645823076674831 0.0 15 6.866382261113411E-5 0.0 0.0 2.702196075038572 0.0 16 6.866382261113411E-5 0.0 0.0 2.8141181058947207 0.0 17 6.866382261113411E-5 0.0 0.0 2.9451286794367646 0.0 18 6.866382261113411E-5 0.0 0.0 3.1284610858084925 0.0 19 6.866382261113411E-5 0.0 0.0 3.2113383197001313 0.0 20 1.3732764522226821E-4 0.0 0.0 3.298335382948438 0.0 21 1.3732764522226821E-4 0.0 0.0 3.422136255116313 0.0 22 1.3732764522226821E-4 0.0 0.0 3.55815928770897 0.0 23 1.3732764522226821E-4 0.0 0.0 3.7156054329563 0.0 24 1.3732764522226821E-4 0.0 0.0 3.833707207847451 0.0 25 1.3732764522226821E-4 0.0 0.0 3.929836559503039 0.0 26 1.3732764522226821E-4 0.0 0.0 4.025004617642071 0.0 27 1.3732764522226821E-4 0.0 0.0 4.114473578504378 0.0 28 1.3732764522226821E-4 0.0 0.0 4.216508018904523 0.0 29 1.3732764522226821E-4 0.0 0.0 4.32286828012917 0.0 30 1.3732764522226821E-4 0.0 0.0 4.4657576949829405 0.0 31 1.3732764522226821E-4 0.0 0.0 4.600407451123375 0.0 32 1.3732764522226821E-4 0.0 0.0 4.72125577891897 0.0 33 1.3732764522226821E-4 0.0 0.0 4.8361303541473974 0.0 34 1.3732764522226821E-4 0.0 0.0 4.958763941330884 0.0 35 1.3732764522226821E-4 0.0 0.0 5.114424827190325 0.0 36 1.3732764522226821E-4 0.0 0.0 5.245160745441924 0.0 37 1.3732764522226821E-4 0.0 0.0 5.374798042531745 0.0 38 1.3732764522226821E-4 0.0 0.0 5.502169433475399 0.0 39 1.3732764522226821E-4 0.0 0.0 5.635583240808832 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAATA 25 3.891321E-5 45.0 16 CGTATTG 20 7.033908E-4 45.0 35 CTATTCG 20 7.033908E-4 45.0 44 ACCAACG 20 7.033908E-4 45.0 1 ACGTTAC 30 2.1659034E-6 44.999996 20 CCGACGG 45 1.9288564E-8 40.0 2 TTCGAAG 90 0.0 40.0 1 TTATACG 40 3.459063E-7 39.375 1 CGACTCG 40 3.459063E-7 39.375 3 CAATCGA 40 3.459063E-7 39.375 17 TAGTCCC 40 3.459063E-7 39.375 28 TCGAACG 40 3.459063E-7 39.375 1 TTACGGG 470 0.0 39.255318 3 TAGTGCG 115 0.0 39.130432 1 CGAATAT 215 0.0 38.720932 14 CGGCTAC 605 0.0 38.67769 25 CGTTTTT 4625 0.0 38.57838 1 CGTTACA 35 6.2494382E-6 38.571426 21 GACGGGA 340 0.0 38.38235 4 GCGGCTA 610 0.0 38.360657 24 >>END_MODULE