SRR1545407_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545407_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2681201
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10161	0.3789719606997014	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8475	0.31608969264146924	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3977	0.1483290510483921	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2865	0.1068550996363197	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATC	20	7.0349703E-4	45.000004	7
CACTACG	20	7.0349703E-4	45.000004	1
CGTACGT	25	3.8922008E-5	45.000004	39
TATCGTG	80	0.0	45.000004	1
GGTCGAA	55	1.8189894E-12	44.999996	9
TATCGAT	60	3.6379788E-12	41.249996	31
TGCGTAT	55	6.184564E-11	40.90909	36
GCGCGAC	365	0.0	40.684933	9
GTGCAAC	45	1.9299478E-8	40.0	45
CGTTTTT	8510	0.0	39.8443	1
CGTATTA	40	3.4605182E-7	39.375004	30
TAGCCCG	40	3.4605182E-7	39.375004	29
TGTTGCG	200	0.0	39.375004	1
TAATGCG	80	0.0	39.375004	1
CTTAACG	120	0.0	39.374996	1
ATTATAC	2480	0.0	38.649193	42
GGCCTAT	950	0.0	38.605263	8
ATACGTA	35	6.2514064E-6	38.571426	43
ACCCGCT	330	0.0	38.181816	34
AGGGCGA	2935	0.0	38.17717	6