SRR1545403_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545403_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1586800
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6895	0.43452230904965966	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6045	0.3809553819006806	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2016	0.1270481472145198	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTTA	30	2.1660271E-6	45.000004	24
CTCGGTT	30	2.1660271E-6	45.000004	22
AGGCACG	30	2.1660271E-6	45.000004	1
TGTTACG	60	0.0	45.000004	1
ACTATCG	20	7.0340995E-4	45.0	33
AACCCGC	20	7.0340995E-4	45.0	25
ATTACGA	20	7.0340995E-4	45.0	11
CGGCACT	25	3.89148E-5	45.0	31
CTAACGG	25	3.89148E-5	45.0	2
TTACGTA	40	6.8175723E-9	45.0	18
CGTAAAG	40	6.8175723E-9	45.0	30
ACCGTTC	20	7.0340995E-4	45.0	11
ACGTATG	25	3.89148E-5	45.0	1
ACGTAAG	35	1.21232E-7	45.0	1
CGGTCCA	25	3.89148E-5	45.0	34
TTCGCAC	25	3.89148E-5	45.0	44
CCACGGT	25	3.89148E-5	45.0	34
ATGCACG	35	1.21232E-7	45.0	1
CGATATC	25	3.89148E-5	45.0	10
ATCGCAA	20	7.0340995E-4	45.0	14