##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545403_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1586800 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.305340307537183 31.0 31.0 33.0 30.0 34.0 2 31.64776090244517 31.0 31.0 34.0 30.0 34.0 3 31.74284408873204 31.0 31.0 34.0 30.0 34.0 4 35.439816612049405 37.0 35.0 37.0 33.0 37.0 5 35.28915679354676 37.0 35.0 37.0 33.0 37.0 6 35.362505041593145 37.0 35.0 37.0 33.0 37.0 7 35.8413461053693 37.0 35.0 37.0 35.0 37.0 8 35.88143055205445 37.0 35.0 37.0 35.0 37.0 9 37.559971641038565 39.0 37.0 39.0 35.0 39.0 10 36.9143408116965 39.0 37.0 39.0 32.0 39.0 11 36.52345538190068 39.0 35.0 39.0 32.0 39.0 12 35.44533967733804 37.0 35.0 39.0 31.0 39.0 13 34.96206138139652 37.0 34.0 39.0 30.0 39.0 14 35.881397781699015 37.0 35.0 40.0 30.0 41.0 15 36.20896269221074 37.0 35.0 40.0 31.0 41.0 16 36.4378831610789 37.0 35.0 40.0 32.0 41.0 17 36.40652886312075 37.0 35.0 40.0 31.0 41.0 18 36.33849004285354 37.0 35.0 40.0 31.0 41.0 19 36.279521678850514 37.0 35.0 40.0 31.0 41.0 20 36.079745399546255 36.0 35.0 40.0 31.0 41.0 21 35.86829468111923 36.0 34.0 40.0 30.0 41.0 22 35.79725233173683 36.0 34.0 40.0 30.0 41.0 23 35.78091820015125 36.0 34.0 40.0 30.0 41.0 24 35.72008885807915 35.0 34.0 40.0 30.0 41.0 25 35.58552621628434 35.0 34.0 40.0 30.0 41.0 26 35.47803440887321 35.0 34.0 40.0 30.0 41.0 27 35.40418326191077 35.0 34.0 40.0 30.0 41.0 28 35.44699395008823 36.0 34.0 40.0 30.0 41.0 29 35.48785417191833 36.0 34.0 40.0 30.0 41.0 30 35.41859528611041 36.0 34.0 40.0 30.0 41.0 31 35.203575119737835 36.0 34.0 40.0 29.0 41.0 32 34.98953302243509 35.0 34.0 40.0 29.0 41.0 33 34.799760524325684 35.0 34.0 40.0 27.0 41.0 34 34.63282140156289 35.0 34.0 40.0 27.0 41.0 35 34.4806150743635 35.0 33.0 40.0 26.0 41.0 36 34.2655035291152 35.0 33.0 40.0 24.0 41.0 37 34.19469183261911 35.0 33.0 40.0 24.0 41.0 38 34.21204499621881 35.0 33.0 40.0 24.0 41.0 39 34.15566486009579 35.0 33.0 40.0 24.0 41.0 40 33.99295185278548 35.0 33.0 40.0 23.0 41.0 41 34.002229644567684 35.0 33.0 40.0 23.0 41.0 42 33.91820834383665 35.0 33.0 40.0 23.0 41.0 43 33.81004096294429 35.0 33.0 40.0 23.0 41.0 44 33.76700340307537 35.0 33.0 39.0 23.0 41.0 45 33.72148474918074 35.0 33.0 39.0 23.0 41.0 46 33.70715843206453 35.0 33.0 39.0 23.0 41.0 47 33.67323166120494 35.0 33.0 39.0 23.0 41.0 48 33.6692292664482 35.0 33.0 39.0 23.0 41.0 49 33.65704436601966 35.0 33.0 39.0 24.0 41.0 50 33.507166624653394 35.0 33.0 39.0 24.0 41.0 51 33.32584887824552 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 16.0 15 51.0 16 161.0 17 438.0 18 945.0 19 1901.0 20 3268.0 21 5064.0 22 7748.0 23 11208.0 24 15954.0 25 22188.0 26 28604.0 27 33416.0 28 36598.0 29 41137.0 30 48727.0 31 58801.0 32 73437.0 33 94390.0 34 165701.0 35 272800.0 36 103917.0 37 119358.0 38 164613.0 39 276158.0 40 200.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.121754474413915 25.24476934711369 29.06503655155029 14.568439626922109 2 29.02287622888833 26.49905470128561 30.640597428787498 13.837471641038569 3 28.03195109654651 25.218805142425005 32.539009326947316 14.21023443408117 4 24.72447693471137 27.510272246029743 32.70046634736577 15.06478447189312 5 22.634106377615325 32.32593899672296 31.47302747668263 13.566927148979078 6 21.364255104613058 41.230211746912026 27.302810688177466 10.102722460297455 7 85.55715906226368 5.479203428283338 7.213448449710108 1.7501890597428786 8 87.61980085707084 3.840685656667507 6.7631081421729276 1.7764053440887322 9 83.09887824552558 5.563271993950089 8.44945802873708 2.888391731787245 10 55.175006301991424 19.112490547012857 15.086085202924124 10.626417948071591 11 50.19460549533653 19.688051424250062 17.735064280312578 12.382278800100831 12 43.10562137635493 21.722271237711116 22.865263423241743 12.306843962692211 13 20.25668011091505 44.66265439879002 22.500126039828586 12.580539450466347 14 14.39217292664482 45.293105621376355 26.9919964708848 13.322724981094025 15 13.406100327703555 22.742752709856315 50.69120241996471 13.159944542475422 16 14.236324678598436 17.66895639021931 49.22315351651122 18.871565414671036 17 15.648285858331231 17.747038064028235 29.313335013864382 37.29134106377615 18 21.004033274514747 22.391227627930427 36.530816738089236 20.07392235946559 19 30.786677590118476 23.941265439879004 25.644882782959417 19.627174187043106 20 32.30974287874969 22.51247794303 25.699142929165614 19.478636249054702 21 20.872699773128307 28.465528106881777 28.65811696496093 22.00365515502899 22 21.673997983362742 25.122573733299724 24.438555583564405 28.764872699773132 23 18.093458532896395 31.204940761280564 25.511784723972774 25.189815981850266 24 19.064973531636 22.91876733047643 41.45928913536678 16.556970002520796 25 15.407234686160825 25.678661457020418 38.32285102092261 20.591252835896142 26 15.157045626417947 36.19347113687925 28.865011343584573 19.784471893118223 27 16.663851777161582 36.37301487269977 29.60284850012604 17.360284850012604 28 14.011091504915555 28.812011595664227 40.47844718931182 16.698449710108395 29 14.480778926140662 24.45487774136627 39.74458028737081 21.319763045122258 30 17.628119485757498 33.29430299974792 31.38851777161583 17.689059742878747 31 29.584320645323924 26.691139400050417 25.345538190068062 18.3790017645576 32 30.738215276027226 26.12055709604235 26.893937484245022 16.247290143685404 33 29.39072346861608 27.418452230904965 24.007877489286614 19.182946811192338 34 18.70008822788001 27.24256365011344 28.286362490547013 25.770985631459542 35 19.990862112427525 26.01443156037308 31.760209226115453 22.234497101083942 36 31.178661457020418 25.049596672548525 26.04701285606252 17.72472901436854 37 19.077892614066045 34.437358205192844 29.162087219561382 17.322661961179733 38 19.977690950340307 34.59314343332493 23.672800604991178 21.756365011343583 39 19.770859591630956 33.97945550794051 27.19164355936476 19.058041341063774 40 24.478510209226116 26.587345601209982 24.661457020418453 24.27268716914545 41 16.76796067557348 24.338669019410133 26.971767078396773 31.92160322661961 42 21.02356944794555 24.947378371565414 24.80684396269221 29.222208217796826 43 21.484371061255356 25.35581043609781 26.581043609780693 26.578774892866146 44 18.46073859339551 31.725107133854298 28.44334509705067 21.37080917569952 45 16.198764809679858 40.61280564658432 22.586337282581294 20.602092261154525 46 21.220002520796573 35.130766322157804 24.895891101588102 18.753340055457524 47 21.321905722208218 28.150113435845725 26.755356692714898 23.772624149231156 48 23.152004033274515 24.32341820015125 31.548462314091253 20.976115452482986 49 20.631711620872196 24.445172674565164 32.97542223342576 21.94769347113688 50 18.574237459037054 35.64853793798841 26.142298966473405 19.634925636501137 51 18.082493067809427 35.50768842954374 23.725296193597174 22.684522309049658 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1152.0 1 1621.5 2 2091.0 3 6289.0 4 10487.0 5 8063.0 6 5639.0 7 6082.0 8 6525.0 9 7247.0 10 7969.0 11 8358.5 12 8748.0 13 8636.5 14 8525.0 15 8202.5 16 7880.0 17 7178.5 18 6477.0 19 6741.5 20 7006.0 21 6871.5 22 6737.0 23 7128.0 24 7519.0 25 8086.0 26 9821.5 27 10990.0 28 15568.0 29 20146.0 30 22659.0 31 25172.0 32 28232.5 33 31293.0 34 36826.5 35 42360.0 36 45583.0 37 48806.0 38 62165.0 39 75524.0 40 98805.5 41 122087.0 42 147793.0 43 173499.0 44 176823.5 45 180148.0 46 170139.5 47 160131.0 48 144358.5 49 128586.0 50 121713.5 51 114841.0 52 102049.0 53 89257.0 54 76465.5 55 63674.0 56 57356.5 57 51039.0 58 44509.5 59 37980.0 60 35593.5 61 33207.0 62 29761.0 63 26315.0 64 22741.5 65 19168.0 66 15707.0 67 12246.0 68 10729.0 69 9212.0 70 7619.0 71 6026.0 72 4718.0 73 3410.0 74 3340.5 75 2427.0 76 1583.0 77 1294.0 78 1005.0 79 648.5 80 292.0 81 173.5 82 55.0 83 51.5 84 48.0 85 31.5 86 15.0 87 9.5 88 4.0 89 3.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1586800.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.69827573050808 #Duplication Level Percentage of deduplicated Percentage of total 1 80.21752475412568 14.197118715173735 2 7.349344051516828 2.6014143492422837 3 2.6166181044219856 1.3892888608049903 4 1.3049906561876994 0.9238433783578628 5 0.83274634847876 0.7369087244475431 6 0.5218503958505966 0.5541511317503188 7 0.393681594982752 0.4877239792621665 8 0.3065279308886827 0.4340012671976024 9 0.26063796655677185 0.4151558338164622 >10 3.28031638969183 14.033638376481672 >50 1.4411896727202758 18.588097094049886 >100 1.4663162535909964 43.83839618111169 >500 0.006461124250829357 0.6952526118031224 >1k 0.0010768540418048928 0.2829545991384418 >5k 7.179026945365952E-4 0.8220548973622445 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6895 0.43452230904965966 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6045 0.3809553819006806 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2016 0.1270481472145198 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03888328711872952 0.0 2 0.0 0.0 0.0 0.12982102344340812 0.0 3 0.0 0.0 0.0 0.18445928913536677 0.0 4 0.0 0.0 0.0 0.27886312074615577 0.0 5 0.0 0.0 0.0 0.45878497605243257 0.0 6 0.0 0.0 0.0 0.6557222082177968 0.0 7 0.0 0.0 0.0 0.7730022687169146 0.0 8 0.0 0.0 0.0 1.0910007562389714 0.0 9 0.0 0.0 0.0 1.2289513486261658 0.0 10 0.0 0.0 0.0 1.4540584824804639 0.0 11 0.0 0.0 0.0 1.6702167885051675 0.0 12 0.0 0.0 0.0 1.867091000756239 0.0 13 1.2603982858583313E-4 0.0 0.0 1.9420216788505167 0.0 14 1.2603982858583313E-4 0.0 0.0 1.9709478195109655 0.0 15 1.2603982858583313E-4 0.0 0.0 2.0155659188303505 0.0 16 1.2603982858583313E-4 0.0 0.0 2.1167128812704816 0.0 17 1.2603982858583313E-4 0.0 0.0 2.240168893370305 0.0 18 1.2603982858583313E-4 0.0 0.0 2.4103856818754728 0.0 19 1.2603982858583313E-4 0.0 0.0 2.4844971010839427 0.0 20 2.5207965717166626E-4 0.0 0.0 2.5674313082934206 0.0 21 2.5207965717166626E-4 0.0 0.0 2.67588858079153 0.0 22 2.5207965717166626E-4 0.0 0.0 2.788001008318629 0.0 23 2.5207965717166626E-4 0.0 0.0 2.929858835391984 0.0 24 2.5207965717166626E-4 0.0 0.0 3.036236450718427 0.0 25 2.5207965717166626E-4 0.0 0.0 3.1256617091000756 0.0 26 2.5207965717166626E-4 0.0 0.0 3.210486513738341 0.0 27 2.5207965717166626E-4 0.0 0.0 3.293672800604991 0.0 28 2.5207965717166626E-4 0.0 0.0 3.3822788001008317 0.0 29 2.5207965717166626E-4 0.0 0.0 3.4807789261406605 0.0 30 2.5207965717166626E-4 0.0 0.0 3.61041088984119 0.0 31 2.5207965717166626E-4 0.0 0.0 3.734055961683892 0.0 32 3.150995714645828E-4 0.0 0.0 3.8426392740105872 0.0 33 3.150995714645828E-4 0.0 0.0 3.943471136879254 0.0 34 3.150995714645828E-4 0.0 0.0 4.060688177464079 0.0 35 3.781194857574994E-4 0.0 0.0 4.2155281068817745 0.0 36 3.781194857574994E-4 0.0 0.0 4.330539450466348 0.0 37 3.781194857574994E-4 0.0 0.0 4.45506680110915 0.0 38 4.411394000504159E-4 0.0 0.0 4.570393244265188 0.0 39 4.411394000504159E-4 0.0 0.0 4.6842072094781955 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTTTA 30 2.1660271E-6 45.000004 24 CTCGGTT 30 2.1660271E-6 45.000004 22 AGGCACG 30 2.1660271E-6 45.000004 1 TGTTACG 60 0.0 45.000004 1 ACTATCG 20 7.0340995E-4 45.0 33 AACCCGC 20 7.0340995E-4 45.0 25 ATTACGA 20 7.0340995E-4 45.0 11 CGGCACT 25 3.89148E-5 45.0 31 CTAACGG 25 3.89148E-5 45.0 2 TTACGTA 40 6.8175723E-9 45.0 18 CGTAAAG 40 6.8175723E-9 45.0 30 ACCGTTC 20 7.0340995E-4 45.0 11 ACGTATG 25 3.89148E-5 45.0 1 ACGTAAG 35 1.21232E-7 45.0 1 CGGTCCA 25 3.89148E-5 45.0 34 TTCGCAC 25 3.89148E-5 45.0 44 CCACGGT 25 3.89148E-5 45.0 34 ATGCACG 35 1.21232E-7 45.0 1 CGATATC 25 3.89148E-5 45.0 10 ATCGCAA 20 7.0340995E-4 45.0 14 >>END_MODULE