SRR1545401_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545401_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1446077
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5944	0.411043118727426	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2781	0.19231341069666413	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2125	0.14694929799727124	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1542	0.10663332588790224	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1527	0.10559603672556855	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATA	20	7.0338923E-4	45.0	9
GTCGAAC	25	3.8913073E-5	45.0	45
TCTTACG	25	3.8913073E-5	45.0	1
TATATCG	20	7.0338923E-4	45.0	37
CGAATTA	20	7.0338923E-4	45.0	44
ATCGGAC	20	7.0338923E-4	45.0	40
ACGGGTA	80	0.0	42.1875	5
CGAATAT	260	0.0	41.538464	14
CGTAAGG	260	0.0	41.538464	2
TCACGAC	60	3.6379788E-12	41.250004	25
CTACGAA	275	0.0	40.090908	11
GCTACGA	275	0.0	40.090908	10
ATAGGGC	730	0.0	40.068493	4
TAATGCG	45	1.9288564E-8	40.0	1
ACCCGCT	280	0.0	39.375004	34
CAATGCG	40	3.4590448E-7	39.375	1
AAATCGT	35	6.2494073E-6	38.57143	12
CGCGACC	310	0.0	38.46774	10
TATGGGC	510	0.0	38.382355	4
GCGATAT	160	0.0	37.96875	9