##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545401_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1446077 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.266401443353292 31.0 31.0 33.0 30.0 34.0 2 31.61149164256122 31.0 31.0 34.0 30.0 34.0 3 31.71384649641755 31.0 31.0 34.0 30.0 34.0 4 35.43633706918788 37.0 35.0 37.0 33.0 37.0 5 35.29037319589482 37.0 35.0 37.0 33.0 37.0 6 35.36091093351184 37.0 35.0 37.0 33.0 37.0 7 35.80165509858742 37.0 35.0 37.0 35.0 37.0 8 35.818629298439845 37.0 35.0 37.0 35.0 37.0 9 37.4420158815886 39.0 37.0 39.0 35.0 39.0 10 36.83882877606103 39.0 37.0 39.0 32.0 39.0 11 36.49647494566334 39.0 35.0 39.0 32.0 39.0 12 35.851894470349784 37.0 35.0 39.0 31.0 39.0 13 35.548151308678584 37.0 35.0 39.0 30.0 39.0 14 36.56542493933587 38.0 35.0 41.0 31.0 41.0 15 36.75065712268434 38.0 35.0 41.0 31.0 41.0 16 36.9052927333745 38.0 35.0 41.0 32.0 41.0 17 36.83938822068258 38.0 35.0 41.0 32.0 41.0 18 36.753237206594115 38.0 35.0 40.0 31.0 41.0 19 36.706410516175836 38.0 35.0 40.0 31.0 41.0 20 36.55436951144372 38.0 35.0 40.0 31.0 41.0 21 36.36618589466536 38.0 35.0 40.0 31.0 41.0 22 36.287018602743835 38.0 35.0 40.0 30.0 41.0 23 36.214037703386474 38.0 35.0 40.0 30.0 41.0 24 36.13431719057837 38.0 35.0 40.0 30.0 41.0 25 36.00785158743276 37.0 34.0 40.0 30.0 41.0 26 35.91664759207151 37.0 34.0 40.0 30.0 41.0 27 35.88443008221554 37.0 34.0 40.0 30.0 41.0 28 35.846245393571714 37.0 34.0 40.0 30.0 41.0 29 35.83813448384837 37.0 34.0 40.0 30.0 41.0 30 35.75156509646443 37.0 34.0 40.0 30.0 41.0 31 35.59956212566827 37.0 34.0 40.0 29.0 41.0 32 35.433989338050466 37.0 34.0 40.0 29.0 41.0 33 35.269292022485665 37.0 34.0 40.0 27.0 41.0 34 35.09973189532784 37.0 34.0 40.0 27.0 41.0 35 34.960670835647065 37.0 34.0 40.0 26.0 41.0 36 34.79597628618669 37.0 34.0 40.0 25.0 41.0 37 34.72321944128839 37.0 33.0 40.0 25.0 41.0 38 34.67175330221005 37.0 33.0 40.0 25.0 41.0 39 34.58513896562908 36.0 33.0 40.0 24.0 41.0 40 34.41929648282906 36.0 33.0 40.0 24.0 41.0 41 34.37738101083137 36.0 33.0 40.0 24.0 41.0 42 34.28550761819737 36.0 33.0 40.0 24.0 41.0 43 34.21605557657026 36.0 33.0 40.0 23.0 41.0 44 34.164708379982535 36.0 33.0 40.0 23.0 41.0 45 34.11660236626404 35.0 33.0 40.0 23.0 41.0 46 34.071961589873844 35.0 33.0 40.0 23.0 41.0 47 34.008629554304505 35.0 33.0 40.0 23.0 41.0 48 33.94295670285884 35.0 33.0 40.0 23.0 41.0 49 33.86700639039277 35.0 33.0 40.0 24.0 41.0 50 33.74381723794791 35.0 33.0 39.0 24.0 41.0 51 33.58925008834246 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 0.0 12 1.0 13 8.0 14 16.0 15 52.0 16 140.0 17 436.0 18 936.0 19 1744.0 20 2989.0 21 4658.0 22 6874.0 23 9649.0 24 13516.0 25 18648.0 26 24399.0 27 28843.0 28 31848.0 29 35779.0 30 42366.0 31 51031.0 32 63099.0 33 79549.0 34 129168.0 35 187720.0 36 108383.0 37 131140.0 38 182531.0 39 290405.0 40 146.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.78030561304827 23.378768903730577 27.73358541765065 14.107340065570506 2 31.81504166099039 25.342979661525632 28.923217781625738 13.918760895858243 3 29.643857139004353 25.421398722198056 30.798774892346675 14.135969246450916 4 27.003472152589385 27.579651705960334 30.56282618422117 14.85404995722911 5 24.026175646248436 31.711658507811137 29.299546289720396 14.962619556220035 6 22.478540216046586 40.5444523355257 26.48641808147146 10.490589366956254 7 85.18495211527464 5.0697162046004465 7.53528339085678 2.210048289268137 8 86.04804585094708 4.4565400044395975 7.28211568263654 2.213298461976783 9 80.49350069187187 6.7959036759453335 9.188445705173375 3.522149927009419 10 46.75076085160057 24.412877045966432 15.478013964678231 13.358348137754767 11 40.85480925289594 22.660757345563205 22.101451029232884 14.382982372307977 12 37.088896372738105 22.611174923603652 25.730165129519385 14.569763574138861 13 22.652251574432068 34.64926141554011 25.860863563973425 16.837623446054394 14 17.24105977759137 37.03848411944869 28.57033200859982 17.15012409436012 15 17.0188724390195 23.757448600593193 42.748830110706415 16.474848849680896 16 18.430553836344814 20.05114527096413 41.4612084971962 20.05709239549485 17 18.537809535730116 20.841559612662397 30.5013495132002 30.11928133840729 18 21.71108454114131 23.706828889471307 33.740319498892525 20.841767070494864 19 29.38591790063738 23.96193287079457 26.548655431211476 20.103493797356574 20 31.437053490235993 21.89406234937697 27.167363840238107 19.501520320148927 21 23.97583254556984 26.396104771737605 28.004801957295495 21.623260725397056 22 24.06427873481149 25.118233676353334 25.858581527816295 24.958906061018883 23 22.378061472521864 28.484859381623522 25.925936170757158 23.211142975097452 24 21.07453475852254 23.270060999518005 36.32641968581203 19.328984556147425 25 19.586370573627825 25.486333023760142 33.57808747390354 21.3492089287085 26 18.973194373466974 31.870087139204895 28.093248146537146 21.063470340790982 27 20.170087761578394 31.76829449607455 27.866842498705118 20.194775243641935 28 18.26223638160347 28.47891225709281 34.26076204794074 18.998089313362982 29 18.610488929704296 25.1134621462066 34.31739803620415 21.958650887884946 30 20.059305279041155 29.67214055683065 30.069007390339518 20.199546773788672 31 26.876992027395495 27.55178320379897 26.06569359722892 19.505531171576617 32 28.472135301232232 26.368720337851997 26.9749121243198 18.184232236595975 33 26.88439135675348 27.83109059891002 25.238005998297464 20.04651204603904 34 21.10503105989515 27.864007241661405 27.99546635483449 23.03549534360895 35 22.2491610059492 25.558044281182813 29.763975224002593 22.428819488865393 36 27.13707499669796 27.435675970228417 25.78161467197113 19.645634361102488 37 21.845517216579754 31.60011534655485 28.05576743147149 18.498600005393904 38 21.3479641817137 31.73005310228985 25.555485634582393 21.36649708141406 39 21.95567732561959 31.27399163391714 27.14212313728799 19.62820790317528 40 24.388742784789468 27.080992229321122 27.326553150350914 21.203711835538495 41 19.39716903041816 25.65278335800929 28.516116361715177 26.433931249857373 42 21.70008927602057 26.378055940313 25.602094494276585 26.319760289389844 43 22.31478683361951 26.731909849890428 27.112456667245244 23.840846649244817 44 20.87613591807352 29.743367745977565 27.49521636814637 21.885279967802546 45 18.672380516390206 33.92205256013338 24.97522607717293 22.43034084630348 46 21.053996433108335 32.75157546935606 25.857060170378205 20.337367927157405 47 22.69270585176308 28.575172691357377 26.834048256074883 21.89807320080466 48 23.323239357240315 25.169475760972617 29.994115112819024 21.513169768968044 49 21.872694192632895 26.172603533560107 30.46670405517825 21.487998218628746 50 20.305972641844107 31.783784680898737 26.981481622347914 20.92876105490925 51 20.093120905733237 31.926377364414204 25.83873472851031 22.141767001342252 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 902.0 1 1739.5 2 2577.0 3 6966.5 4 11356.0 5 8825.0 6 6294.0 7 6587.0 8 6880.0 9 6989.5 10 7099.0 11 7377.5 12 7656.0 13 7265.5 14 6875.0 15 6651.5 16 6428.0 17 6089.0 18 5750.0 19 5976.5 20 6203.0 21 6409.5 22 6616.0 23 7020.5 24 7425.0 25 8218.0 26 10495.0 27 11979.0 28 15216.0 29 18453.0 30 21152.5 31 23852.0 32 27782.5 33 31713.0 34 36397.0 35 41081.0 36 44746.5 37 48412.0 38 54524.0 39 60636.0 40 76013.5 41 91391.0 42 107388.0 43 123385.0 44 129370.5 45 135356.0 46 128090.0 47 120824.0 48 113326.0 49 105828.0 50 99650.0 51 93472.0 52 87767.5 53 82063.0 54 76817.5 55 71572.0 56 65339.0 57 59106.0 58 57263.0 59 55420.0 60 53339.0 61 51258.0 62 44702.0 63 38146.0 64 33201.0 65 28256.0 66 24731.0 67 21206.0 68 17973.0 69 14740.0 70 12404.5 71 10069.0 72 8985.0 73 7901.0 74 6125.5 75 3336.5 76 2323.0 77 1714.0 78 1105.0 79 893.0 80 681.0 81 473.0 82 265.0 83 183.5 84 102.0 85 68.5 86 35.0 87 24.0 88 13.0 89 10.5 90 8.0 91 5.5 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1446077.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.75654172073854 #Duplication Level Percentage of deduplicated Percentage of total 1 78.02878801483945 14.635502178189993 2 6.141391595806544 2.3038253538027695 3 2.313503441826853 1.3017997148309273 4 1.2801683497161316 0.9604612424407851 5 0.8931874812974302 0.8376554128698313 6 0.6318614480574126 0.7110921367329075 7 0.5099793507545018 0.6695814278399376 8 0.45317893831485456 0.6800055730770053 9 0.35238668766379266 0.5948600048098909 >10 6.582333473021975 31.399649975914357 >50 2.1673020737948923 28.830854852453975 >100 0.6410905371523636 15.615174250595581 >500 0.0022285881940406443 0.32165567424978964 >1k 0.0022285881940406443 0.7237775178213266 >5k 3.714313656734407E-4 0.4141046843709659 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5944 0.411043118727426 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2781 0.19231341069666413 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2125 0.14694929799727124 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1542 0.10663332588790224 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1527 0.10559603672556855 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.019016967976117453 0.0 2 0.0 0.0 0.0 0.060646839691109115 0.0 3 0.0 0.0 0.0 0.08893025751740744 0.0 4 0.0 0.0 0.0 0.1470184506080935 0.0 5 0.0 0.0 0.0 0.2574551700912192 0.0 6 0.0 0.0 0.0 0.4035746367586235 0.0 7 0.0 0.0 0.0 0.4838608179232503 0.0 8 0.0 0.0 0.0 0.682259658372272 0.0 9 0.0 0.0 0.0 0.791382478249775 0.0 10 0.0 0.0 0.0 1.1222777210342187 0.0 11 0.0 0.0 0.0 1.2697110873072457 0.0 12 0.0 0.0 0.0 1.3748922083678807 0.0 13 0.0 0.0 0.0 1.419772252791518 0.0 14 0.0 0.0 0.0 1.4378902368269464 0.0 15 6.915261082224529E-5 0.0 0.0 1.466796028150645 0.0 16 6.915261082224529E-5 0.0 0.0 1.5320069401560221 0.0 17 6.915261082224529E-5 0.0 0.0 1.6048246393518464 0.0 18 6.915261082224529E-5 0.0 0.0 1.701430836670523 0.0 19 6.915261082224529E-5 0.0 0.0 1.7490078329162277 0.0 20 6.915261082224529E-5 0.0 0.0 1.799489238816467 0.0 21 6.915261082224529E-5 0.0 0.0 1.869125917914468 0.0 22 6.915261082224529E-5 0.0 0.0 1.9474758259760718 0.0 23 6.915261082224529E-5 0.0 0.0 2.033294216006478 0.0 24 6.915261082224529E-5 0.0 0.0 2.1023776742179012 0.0 25 6.915261082224529E-5 0.0 0.0 2.1600509516436537 0.0 26 6.915261082224529E-5 0.0 0.0 2.220628638723941 0.0 27 6.915261082224529E-5 0.0 0.0 2.274844285608581 0.0 28 6.915261082224529E-5 0.0 0.0 2.3321026473694 0.0 29 6.915261082224529E-5 0.0 0.0 2.397728475039711 0.0 30 6.915261082224529E-5 0.0 0.0 2.487142800832874 0.0 31 6.915261082224529E-5 0.0 0.0 2.5688120342139458 0.0 32 6.915261082224529E-5 0.0 0.0 2.6454331270049933 0.0 33 6.915261082224529E-5 0.0 0.0 2.719218962752329 0.0 34 1.3830522164449057E-4 0.0 0.0 2.798951923030378 0.0 35 1.3830522164449057E-4 0.0 0.0 2.895350662516588 0.0 36 1.3830522164449057E-4 0.0 0.0 2.9846266830881065 0.0 37 1.3830522164449057E-4 0.0 0.0 3.0777060972548487 0.0 38 1.3830522164449057E-4 0.0 0.0 3.163731945117722 0.0 39 1.3830522164449057E-4 0.0 0.0 3.255635764900486 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATA 20 7.0338923E-4 45.0 9 GTCGAAC 25 3.8913073E-5 45.0 45 TCTTACG 25 3.8913073E-5 45.0 1 TATATCG 20 7.0338923E-4 45.0 37 CGAATTA 20 7.0338923E-4 45.0 44 ATCGGAC 20 7.0338923E-4 45.0 40 ACGGGTA 80 0.0 42.1875 5 CGAATAT 260 0.0 41.538464 14 CGTAAGG 260 0.0 41.538464 2 TCACGAC 60 3.6379788E-12 41.250004 25 CTACGAA 275 0.0 40.090908 11 GCTACGA 275 0.0 40.090908 10 ATAGGGC 730 0.0 40.068493 4 TAATGCG 45 1.9288564E-8 40.0 1 ACCCGCT 280 0.0 39.375004 34 CAATGCG 40 3.4590448E-7 39.375 1 AAATCGT 35 6.2494073E-6 38.57143 12 CGCGACC 310 0.0 38.46774 10 TATGGGC 510 0.0 38.382355 4 GCGATAT 160 0.0 37.96875 9 >>END_MODULE