##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545398_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1948337 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.413137973564123 31.0 31.0 33.0 30.0 34.0 2 31.76649727434217 31.0 31.0 34.0 30.0 34.0 3 31.852244760531676 31.0 31.0 34.0 30.0 34.0 4 35.551330698949926 37.0 35.0 37.0 33.0 37.0 5 35.41714857337309 37.0 35.0 37.0 33.0 37.0 6 35.48936503284596 37.0 35.0 37.0 33.0 37.0 7 35.909319588962276 37.0 35.0 37.0 35.0 37.0 8 35.9519667285485 37.0 35.0 37.0 35.0 37.0 9 37.67189095110343 39.0 37.0 39.0 35.0 39.0 10 37.0854220804717 39.0 37.0 39.0 33.0 39.0 11 36.69107141115731 39.0 35.0 39.0 32.0 39.0 12 35.6703352654084 37.0 35.0 39.0 31.0 39.0 13 35.21527333310408 37.0 35.0 39.0 30.0 39.0 14 36.14968868322061 38.0 35.0 40.0 31.0 41.0 15 36.44973687816841 38.0 35.0 40.0 31.0 41.0 16 36.67260284026839 38.0 35.0 40.0 32.0 41.0 17 36.646138219414816 38.0 35.0 40.0 32.0 41.0 18 36.60007329327524 38.0 35.0 40.0 32.0 41.0 19 36.53314493334572 37.0 35.0 40.0 31.0 41.0 20 36.364435926638976 37.0 35.0 40.0 31.0 41.0 21 36.15824829072178 37.0 35.0 40.0 31.0 41.0 22 36.088418482018255 37.0 35.0 40.0 31.0 41.0 23 36.05423291761127 36.0 35.0 40.0 31.0 41.0 24 35.971252919797756 36.0 34.0 40.0 31.0 41.0 25 35.86992137397175 36.0 34.0 40.0 31.0 41.0 26 35.75725657316983 36.0 34.0 40.0 30.0 41.0 27 35.72823438655633 36.0 34.0 40.0 30.0 41.0 28 35.76292037773753 36.0 34.0 40.0 30.0 41.0 29 35.793386359751935 36.0 35.0 40.0 30.0 41.0 30 35.73014473368827 36.0 35.0 40.0 30.0 41.0 31 35.52875708873773 36.0 34.0 40.0 30.0 41.0 32 35.30817923182694 36.0 34.0 40.0 29.0 41.0 33 35.135020276266374 36.0 34.0 40.0 29.0 41.0 34 34.97119235532662 35.0 34.0 40.0 28.0 41.0 35 34.798511243178154 35.0 34.0 40.0 27.0 41.0 36 34.59864284258832 35.0 33.0 40.0 26.0 41.0 37 34.513062165323554 35.0 33.0 40.0 26.0 41.0 38 34.527934849053324 35.0 33.0 40.0 26.0 41.0 39 34.49303534244846 35.0 33.0 40.0 26.0 41.0 40 34.29556488430903 35.0 33.0 40.0 24.0 41.0 41 34.31429932296107 35.0 33.0 40.0 24.0 41.0 42 34.237379365068776 35.0 33.0 40.0 25.0 41.0 43 34.15610646412813 35.0 33.0 40.0 24.0 41.0 44 34.06324213932189 35.0 33.0 40.0 24.0 41.0 45 33.989069139476385 35.0 33.0 40.0 24.0 41.0 46 33.990024313042355 35.0 33.0 39.0 24.0 41.0 47 33.971586024389005 35.0 33.0 39.0 24.0 41.0 48 33.97663494559719 35.0 33.0 39.0 24.0 41.0 49 33.92848105846165 35.0 33.0 39.0 24.0 41.0 50 33.77483926035383 35.0 33.0 39.0 24.0 41.0 51 33.60291315106165 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 10.0 14 14.0 15 38.0 16 129.0 17 325.0 18 926.0 19 1739.0 20 3130.0 21 5114.0 22 7872.0 23 11427.0 24 16897.0 25 23687.0 26 31679.0 27 36506.0 28 40535.0 29 46449.0 30 55912.0 31 67876.0 32 85680.0 33 113717.0 34 203259.0 35 328821.0 36 132245.0 37 155693.0 38 219864.0 39 358609.0 40 182.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.45058426750608 25.009225816683667 30.198471824946093 14.341718090864159 2 29.357806170082483 26.55136149444372 30.758539205486525 13.332293129987265 3 26.90961573896097 25.736204773609494 33.15191365764752 14.202265829782016 4 25.765152537779656 27.634336359674943 32.011864477243925 14.588646625301473 5 22.207708420052587 32.757628685386564 30.56606736924875 14.4685955253121 6 21.690652079183426 40.16019815873742 26.936407818565268 11.21274194351388 7 86.56849405416004 4.950734908796579 6.8503036179059364 1.630467419137449 8 88.55079998994015 3.369437628090007 6.521407744142825 1.5583546378270288 9 84.28285250446919 4.696826062431705 8.193141124969653 2.8271803081294458 10 55.41284695614773 20.784032741769007 13.894310891801572 9.908809410281691 11 48.77472429051032 19.061486796175405 19.157158130241328 13.006630783072948 12 43.61765957326684 20.05181855089751 23.799989426880465 12.530532448955187 13 20.473049580231756 44.25035299334766 21.882918612129217 13.393678814291368 14 14.62005802897548 43.714460075438694 26.952986059393215 14.71249583619261 15 13.037631580162982 21.5635180156205 51.0392709269495 14.359579477267022 16 14.380417761403699 16.483903965279108 48.58533200365234 20.55034626966485 17 14.925549327452078 17.512268154841795 28.755446311392742 38.80673620631339 18 20.425213913198796 21.684492980423816 36.932830408702394 20.95746269767499 19 28.890843832458142 23.873641982880788 25.779010509988776 21.456503674672298 20 31.967878246935722 20.755906190766794 26.591139007266197 20.68507655503129 21 20.907009413669194 27.987560673538507 28.736661060175933 22.368768852616363 22 22.72979469157543 24.09290589872286 24.12329078593693 29.054008623764783 23 19.31272669974445 30.464955497945173 23.886062832045994 26.336254970264385 24 18.616645888262656 21.96596379373794 42.5476188154308 16.8697715025686 25 16.208694902370585 25.884331098778084 37.15609773873821 20.750876260113113 26 16.148079105411437 34.77242386712361 27.798168386680537 21.281328640784423 27 16.219319347730913 35.92473991922342 27.994130378882094 19.861810354163577 28 13.99968280641388 28.917481934593454 39.039139532842626 18.043695726150045 29 14.381649581155623 22.725175367505724 38.79195436929032 24.101220682048332 30 17.266520114333403 32.0626257161877 32.006167310891286 18.664686858587608 31 28.94755886686954 27.60071794561208 25.61861731312396 17.83310587439442 32 29.811937051957642 25.341149914003587 26.72571531516365 18.121197718875123 33 29.54411890756065 27.938852467514604 23.689690233260468 18.827338391664274 34 19.892195241377646 25.98143955588792 27.422925294751373 26.70343990798306 35 19.74981740838469 25.901011991252027 31.89540618486432 22.453764415498963 36 31.678554582703093 24.538568019803556 25.01584684785024 18.767030549643106 37 19.868944643560123 33.548354314474345 29.721706255129376 16.86099478683616 38 20.225094529334502 31.963566877803995 26.03794928700733 21.77338930585417 39 20.78023463086725 32.94825279199646 27.2523695849332 19.019142992203093 40 24.84919190057983 25.065581570334082 26.952883407747226 23.132343121338863 41 17.284278849090278 24.085412328565337 27.883112623740143 30.747196198604243 42 21.301602340868136 24.004163550761497 25.741337355909167 28.9528967524612 43 21.850121411234298 25.36409255688313 26.979316206590543 25.806469825292034 44 18.93034931841873 29.76020062237693 29.878147363623437 21.431302695580897 45 16.330901686925824 39.46750485157342 22.530907127463063 21.670686334037693 46 20.990516527684893 33.86282763197537 26.123201479004916 19.02345436133482 47 20.77284371235572 27.993822423944113 26.805629621569576 24.427704242130595 48 22.18276407007617 23.980143065599023 32.24082897363238 21.59626389069242 49 21.292209715259734 25.158481309958187 32.55643145923934 20.992877515542745 50 19.19616575571885 35.29173854420462 26.303457769369466 19.20863793070706 51 18.25757043057746 33.96091127972215 25.009585097444642 22.771933192255755 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1056.0 1 1834.5 2 2613.0 3 7641.0 4 12669.0 5 9592.0 6 6515.0 7 7243.5 8 7972.0 9 8790.5 10 9609.0 11 10027.5 12 10446.0 13 10537.0 14 10628.0 15 10064.5 16 9501.0 17 9001.5 18 8502.0 19 8384.5 20 8267.0 21 7839.0 22 7411.0 23 7305.5 24 7200.0 25 8244.5 26 11107.5 27 12926.0 28 14818.5 29 16711.0 30 24854.0 31 32997.0 32 36916.5 33 40836.0 34 49484.0 35 58132.0 36 61020.5 37 63909.0 38 76170.0 39 88431.0 40 118725.0 41 149019.0 42 176776.0 43 204533.0 44 202997.0 45 201461.0 46 186936.5 47 172412.0 48 162655.0 49 152898.0 50 150045.0 51 147192.0 52 130451.5 53 113711.0 54 100207.0 55 86703.0 56 76112.0 57 65521.0 58 59473.5 59 53426.0 60 50168.0 61 46910.0 62 42470.5 63 38031.0 64 33590.5 65 29150.0 66 25431.5 67 21713.0 68 18665.0 69 15617.0 70 12580.0 71 9543.0 72 7576.0 73 5609.0 74 4774.0 75 3209.0 76 2479.0 77 2040.5 78 1602.0 79 1173.0 80 744.0 81 526.5 82 309.0 83 214.0 84 119.0 85 76.0 86 33.0 87 31.5 88 30.0 89 19.0 90 8.0 91 5.0 92 2.0 93 2.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1948337.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.877115779658602 #Duplication Level Percentage of deduplicated Percentage of total 1 80.51963060613544 12.784194976689545 2 7.197398921434591 2.2854787197601385 3 2.5355183869662423 1.2077015697394875 4 1.2603227318001164 0.8004115973010426 5 0.7365714403690207 0.5847315019364422 6 0.5052973526392638 0.48135987426051435 7 0.3523718355937391 0.3916253901848835 8 0.293551950516186 0.3728606644552078 9 0.22898968420457283 0.3272126155617117 >10 2.9766904561653713 11.83970183530957 >50 1.587938413210351 18.41376993491183 >100 1.797905486639738 48.87161062062301 >500 0.006510611937858511 0.6317441631608617 >1k 6.510611937858512E-4 0.21097763838850014 >5k 6.510611937858512E-4 0.7966188977172838 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7922 0.40660316978017663 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7491 0.38448174006858155 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2918 0.14976875150448818 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.021864800596611368 0.0 2 0.0 0.0 0.0 0.07544895980520824 0.0 3 0.0 0.0 0.0 0.10937532880605358 0.0 4 0.0 0.0 0.0 0.17342995590598545 0.0 5 0.0 0.0 0.0 0.2884511252416805 0.0 6 0.0 0.0 0.0 0.43724468610923056 0.0 7 0.0 0.0 0.0 0.5258330566016043 0.0 8 0.0 0.0 0.0 0.7561833502109748 0.0 9 0.0 0.0 0.0 0.8764397534923373 0.0 10 0.0 0.0 0.0 1.082461607001253 0.0 11 0.0 0.0 0.0 1.2919736164739468 0.0 12 0.0 0.0 0.0 1.4750528271033194 0.0 13 0.0 0.0 0.0 1.5544538752792767 0.0 14 0.0 0.0 0.0 1.5834016394494381 0.0 15 0.0 0.0 0.0 1.6234357813868956 0.0 16 0.0 0.0 0.0 1.7114595678263052 0.0 17 0.0 0.0 0.0 1.8126740907758772 0.0 18 0.0 0.0 0.0 1.9485848700712454 0.0 19 5.13258229967403E-5 0.0 0.0 2.0123828680561937 0.0 20 1.026516459934806E-4 0.0 0.0 2.078644505544985 0.0 21 1.026516459934806E-4 0.0 0.0 2.1749317494868703 0.0 22 1.026516459934806E-4 0.0 0.0 2.276094946613445 0.0 23 1.026516459934806E-4 0.0 0.0 2.4007140448495305 0.0 24 1.026516459934806E-4 0.0 0.0 2.4865308209000805 0.0 25 1.026516459934806E-4 0.0 0.0 2.5557180302996865 0.0 26 1.026516459934806E-4 0.0 0.0 2.6273688792031358 0.0 27 1.026516459934806E-4 0.0 0.0 2.6986091215226113 0.0 28 1.026516459934806E-4 0.0 0.0 2.7679503083912076 0.0 29 1.026516459934806E-4 0.0 0.0 2.8432452907274257 0.0 30 1.026516459934806E-4 0.0 0.0 2.9575478985411663 0.0 31 1.026516459934806E-4 0.0 0.0 3.058762421490738 0.0 32 1.026516459934806E-4 0.0 0.0 3.1451951074172486 0.0 33 1.026516459934806E-4 0.0 0.0 3.2287535472559417 0.0 34 1.539774689902209E-4 0.0 0.0 3.3246815104368497 0.0 35 2.053032919869612E-4 0.0 0.0 3.4577180436444004 0.0 36 2.053032919869612E-4 0.0 0.0 3.5565202529131255 0.0 37 2.053032919869612E-4 0.0 0.0 3.6580940566236744 0.0 38 2.053032919869612E-4 0.0 0.0 3.7558697494324647 0.0 39 2.053032919869612E-4 0.0 0.0 3.8715068286441205 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGTACG 60 0.0 45.000004 1 ATCGTAG 30 2.1662818E-6 45.000004 1 TAATGCG 115 0.0 45.000004 1 TCGCACC 20 7.034495E-4 45.0 44 GGTCGAA 25 3.8918075E-5 45.0 4 CGCATCG 20 7.034495E-4 45.0 21 TATATCG 25 3.8918075E-5 45.0 1 TGTATCG 20 7.034495E-4 45.0 2 TAACGCG 100 0.0 45.0 1 ATCGTAC 25 3.8918075E-5 45.0 10 CTAACGG 185 0.0 45.0 2 CGTAGTC 25 3.8918075E-5 45.0 40 CTACGAT 25 3.8918075E-5 45.0 23 TATTACG 85 0.0 45.0 1 CGGTCCA 25 3.8918075E-5 45.0 24 GCTAACG 135 0.0 45.0 1 CAATACG 25 3.8918075E-5 45.0 1 GCGTAGC 20 7.034495E-4 45.0 39 GCTACGA 230 0.0 43.04348 10 TACGTAG 90 0.0 42.5 1 >>END_MODULE