##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545394_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4491113 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32178816253343 31.0 31.0 33.0 30.0 34.0 2 31.672279455003693 31.0 31.0 34.0 30.0 34.0 3 31.75201158376554 31.0 31.0 34.0 30.0 34.0 4 35.473607989823456 37.0 35.0 37.0 33.0 37.0 5 35.33193509047757 37.0 35.0 37.0 33.0 37.0 6 35.4041557181928 37.0 35.0 37.0 33.0 37.0 7 35.848795165029244 37.0 35.0 37.0 35.0 37.0 8 35.86468009154969 37.0 35.0 37.0 35.0 37.0 9 37.49658670356324 39.0 37.0 39.0 35.0 39.0 10 36.904158056143324 39.0 37.0 39.0 32.0 39.0 11 36.53857228709231 39.0 35.0 39.0 32.0 39.0 12 35.847144571958 37.0 35.0 39.0 31.0 39.0 13 35.52542766125012 37.0 35.0 39.0 30.0 39.0 14 36.522078825449285 38.0 35.0 41.0 31.0 41.0 15 36.70032528684983 38.0 35.0 41.0 31.0 41.0 16 36.84133086831705 38.0 35.0 41.0 32.0 41.0 17 36.772312787498336 38.0 35.0 41.0 31.0 41.0 18 36.66957299894258 38.0 35.0 40.0 31.0 41.0 19 36.61103094043726 38.0 35.0 40.0 31.0 41.0 20 36.47657362440001 38.0 35.0 40.0 31.0 41.0 21 36.28797249145145 38.0 35.0 40.0 31.0 41.0 22 36.20500686578138 38.0 35.0 40.0 30.0 41.0 23 36.15945201111617 38.0 35.0 40.0 30.0 41.0 24 36.081081237546236 37.0 35.0 40.0 30.0 41.0 25 35.95941629613862 37.0 34.0 40.0 30.0 41.0 26 35.86659097644615 37.0 34.0 40.0 30.0 41.0 27 35.81749824598045 37.0 34.0 40.0 30.0 41.0 28 35.77980937019398 37.0 34.0 40.0 30.0 41.0 29 35.763800643626645 37.0 34.0 40.0 30.0 41.0 30 35.655435746105695 37.0 34.0 40.0 29.0 41.0 31 35.47638636569599 37.0 34.0 40.0 29.0 41.0 32 35.30732715921421 37.0 34.0 40.0 29.0 41.0 33 35.12215635634196 37.0 34.0 40.0 27.0 41.0 34 34.91410592429983 37.0 34.0 40.0 26.0 41.0 35 34.75585227982462 36.0 34.0 40.0 25.0 41.0 36 34.61190266199047 36.0 33.0 40.0 24.0 41.0 37 34.57000614324333 36.0 33.0 40.0 25.0 41.0 38 34.52382894841435 36.0 33.0 40.0 25.0 41.0 39 34.44775226096515 36.0 33.0 40.0 24.0 41.0 40 34.27909785391728 36.0 33.0 40.0 23.0 41.0 41 34.211803399291 36.0 33.0 40.0 23.0 41.0 42 34.13601171914401 35.0 33.0 40.0 23.0 41.0 43 34.03710594678869 35.0 33.0 40.0 23.0 41.0 44 33.95927201119188 35.0 33.0 40.0 23.0 41.0 45 33.908718395640456 35.0 33.0 40.0 23.0 41.0 46 33.856503053920044 35.0 33.0 40.0 23.0 41.0 47 33.79943301359819 35.0 33.0 40.0 23.0 41.0 48 33.74605470848763 35.0 33.0 39.0 23.0 41.0 49 33.68137742247857 35.0 33.0 39.0 24.0 41.0 50 33.557486306846435 35.0 33.0 39.0 23.0 41.0 51 33.39056198318769 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 9.0 12 15.0 13 21.0 14 47.0 15 142.0 16 455.0 17 1238.0 18 2745.0 19 5398.0 20 9529.0 21 14756.0 22 21806.0 23 31091.0 24 43203.0 25 59170.0 26 76707.0 27 90441.0 28 101140.0 29 114750.0 30 134289.0 31 161758.0 32 198007.0 33 251610.0 34 415266.0 35 602957.0 36 335192.0 37 405649.0 38 555794.0 39 857433.0 40 494.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.81765566798253 23.34672941874319 28.78999036541721 15.045624547857066 2 33.05770752149857 25.752124250714694 28.293454206117723 12.896714021669018 3 28.785470327733904 25.54409118630504 31.761703613335936 13.908734872625114 4 27.152200356570855 26.884916945977533 30.833136463054927 15.129746234396684 5 23.55752349139289 31.689004485079757 29.75278065815757 15.000691365369786 6 22.68226161310125 40.301279437858724 26.835641855370817 10.180817093669209 7 85.02400184542228 4.967588212543305 7.867737908175545 2.1406720338588676 8 85.73395948843861 4.238615238583398 8.024714586339734 2.0027106866382565 9 80.52320215501146 6.047365096358074 9.996475261254838 3.4329574873756235 10 48.964900237424445 22.863352580974915 15.782168028281632 12.38957915331901 11 41.97355978351023 22.06626731502859 21.583981520839043 14.37619138062213 12 37.34234698614798 21.270963344721007 26.524805766410243 14.861883902720773 13 23.381420151307704 32.926982687810344 26.37617891155266 17.315418249329287 14 18.14523482263751 35.54176882211603 29.33451017598533 16.978486179261132 15 17.892825230627686 23.104473211874204 43.323336553767405 15.6793650037307 16 20.487571788997517 19.334939913558173 41.48437146872056 18.69311682872375 17 20.31554316268595 19.713287107227096 30.132397024969087 29.83877270511786 18 23.68579904357784 22.903075473718875 33.479050738647636 19.93207474405565 19 30.046471776595247 23.127941781914636 27.183239433075947 19.642347008414173 20 31.865709012443016 22.204495856595013 26.56735646598071 19.362438664981262 21 25.353002696658933 26.408776621741648 27.950243068923005 20.28797761267641 22 23.56333496841429 24.596620036057875 27.32093358595074 24.51911140957709 23 22.846541603384285 27.169323060898265 27.185822311752123 22.798313023965328 24 22.752155200726413 22.257645265215995 36.00855734424852 18.981642189809076 25 21.083036654833666 23.541892622162923 33.63807590679638 21.736994816207027 26 19.260726684009065 30.595467092455703 28.657506502285734 21.486299721249498 27 19.744793773837355 30.69058827956455 29.611323518245925 19.95329442835217 28 18.11655596285375 27.923991224447036 35.17687041051962 18.782582402179592 29 20.15598360584559 24.78632802158396 34.12419148660922 20.93349688596123 30 21.51261836431192 28.32538393044219 30.42277048027961 19.73922722496628 31 28.05335782021071 25.66352705888273 27.080503207111466 19.20261191379509 32 29.883973081950955 25.324457434048085 27.30374408303688 17.487825400964084 33 28.619319977030194 27.145832224662346 25.23016009617215 19.004687702135307 34 21.9624177792899 26.87247014270182 28.6789488485371 22.486163229471178 35 23.180490003257546 25.576555299321125 30.091560822450912 21.151393874970413 36 27.959594871026404 27.92735341996516 25.34273798054068 18.770313728467755 37 22.96170236642899 32.15125070333345 27.184709001977907 17.702337928259652 38 22.184678942614003 31.656562638259157 24.45685512700304 21.7019032921238 39 23.378547812090233 30.485917410673036 25.871916382420125 20.263618394816607 40 25.26115464028627 26.1174457200253 26.166030558572007 22.45536908111642 41 19.150442217775414 25.806965890192473 27.92098528805666 27.12160660397545 42 22.288728874112053 26.341911236702348 25.429153085215177 25.940206803970415 43 22.96644506606714 25.625696792754937 26.66523866132961 24.74261947984831 44 20.96275466682758 28.703419397374326 28.692174968654765 21.641650967143335 45 20.42003841809369 32.71222523236445 24.821041020343955 22.046695329197906 46 21.705933473506455 31.558658176714772 25.857866413069548 20.87754193670923 47 22.694218560076308 26.895894180351288 27.572897854050876 22.83698940552153 48 23.07198683266264 24.765575927392607 31.055909748875166 21.106527491069585 49 22.089557755505147 25.589981815198147 30.43499462160048 21.88546580769622 50 20.66688146123244 30.77206028884154 27.1536921916683 21.40736605825772 51 20.21400931127763 31.037963195314838 26.163848471414546 22.584179021992988 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3833.0 1 7351.0 2 10869.0 3 29495.5 4 48122.0 5 34581.0 6 21040.0 7 21064.5 8 21089.0 9 21719.0 10 22349.0 11 22747.5 12 23146.0 13 23315.0 14 23484.0 15 23085.5 16 22687.0 17 21232.5 18 19778.0 19 20344.5 20 20911.0 21 21747.0 22 22583.0 23 23404.0 24 24225.0 25 28040.0 26 36776.0 27 41697.0 28 48276.0 29 54855.0 30 62658.5 31 70462.0 32 84091.5 33 97721.0 34 102938.5 35 108156.0 36 117586.5 37 127017.0 38 145525.0 39 164033.0 40 220320.0 41 276607.0 42 319267.5 43 361928.0 44 364137.5 45 366347.0 46 357288.5 47 348230.0 48 325520.0 49 302810.0 50 294704.5 51 286599.0 52 272043.5 53 257488.0 54 243653.5 55 229819.0 56 224503.0 57 219187.0 58 213468.0 59 207749.0 60 198203.5 61 188658.0 62 164585.5 63 140513.0 64 122511.0 65 104509.0 66 88907.5 67 73306.0 68 63096.5 69 52887.0 70 44246.5 71 35606.0 72 30635.0 73 25664.0 74 20875.5 75 12521.0 76 8955.0 77 6675.0 78 4395.0 79 3380.5 80 2366.0 81 1640.0 82 914.0 83 661.5 84 409.0 85 247.5 86 86.0 87 62.5 88 39.0 89 26.0 90 13.0 91 15.0 92 17.0 93 9.5 94 2.0 95 5.5 96 9.0 97 5.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4491113.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.307483919799871 #Duplication Level Percentage of deduplicated Percentage of total 1 81.41081216520318 12.461946981166955 2 6.9606979008108265 2.1310154237449286 3 2.270423633712078 1.042634197925437 4 1.1906048854892004 0.7290066055784441 5 0.7603738554977578 0.5819705283034079 6 0.542475815311858 0.4982363891859955 7 0.42448925441928287 0.4548503705305707 8 0.34332532392244935 0.420435750016238 9 0.2618030099991169 0.3606790829145018 >10 2.6778584807222074 9.858462100476624 >50 1.2964143663497136 14.453682620537878 >100 1.838411431178411 53.59029151607233 >500 0.01966791822020454 1.918376756424076 >1k 0.0023484081456960648 0.6887229585334913 >5k 0.0 0.0 >10k+ 2.935510182120081E-4 0.8096887185890899 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25699 0.5722189577505621 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 10339 0.23021019511199114 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.012869860989914972 0.0 2 2.226619548428196E-5 0.0 0.0 0.047850054095721926 0.0 3 2.226619548428196E-5 0.0 0.0 0.07926765592404378 0.0 4 2.226619548428196E-5 0.0 0.0 0.12829781838043264 0.0 5 2.226619548428196E-5 0.0 0.0 0.23143483586362668 0.0 6 2.226619548428196E-5 0.0 0.0 0.36908445634745773 0.0 7 2.226619548428196E-5 0.0 0.0 0.4459473631591991 0.0 8 2.226619548428196E-5 0.0 0.0 0.6170630754559059 0.0 9 2.226619548428196E-5 0.0 0.0 0.7132530399480039 0.0 10 2.226619548428196E-5 0.0 0.0 0.8686488182328078 0.0 11 2.226619548428196E-5 0.0 0.0 1.039630933356609 0.0 12 4.453239096856392E-5 0.0 0.0 1.1701553712854698 0.0 13 6.679858645284587E-5 0.0 0.0 1.2307862215891696 0.0 14 8.906478193712784E-5 0.0 0.0 1.2575501885612765 0.0 15 8.906478193712784E-5 0.0 0.0 1.291328007110932 0.0 16 8.906478193712784E-5 0.0 0.0 1.3651181789458426 0.0 17 8.906478193712784E-5 0.0 0.0 1.4418029561937096 0.0 18 8.906478193712784E-5 0.0 0.0 1.544717311722061 0.0 19 8.906478193712784E-5 0.0 0.0 1.5994253540269416 0.0 20 8.906478193712784E-5 0.0 0.0 1.6587870311880373 0.0 21 8.906478193712784E-5 0.0 0.0 1.7334455846468348 0.0 22 8.906478193712784E-5 0.0 0.0 1.8142718742547783 0.0 23 1.1133097742140979E-4 0.0 0.0 1.9043163687932145 0.0 24 1.1133097742140979E-4 0.0 0.0 1.978908123665559 0.0 25 1.1133097742140979E-4 0.0 0.0 2.039939765487976 0.0 26 1.1133097742140979E-4 0.0 0.0 2.10106047209233 0.0 27 1.1133097742140979E-4 0.0 0.0 2.1624261068470108 0.0 28 1.3359717290569175E-4 0.0 0.0 2.2261296921275417 0.0 29 1.3359717290569175E-4 0.0 0.0 2.2945091784597715 0.0 30 1.3359717290569175E-4 0.0 0.0 2.3824829168181694 0.0 31 1.558633683899737E-4 0.0 0.0 2.462819350125459 0.0 32 1.7812956387425568E-4 0.0 0.0 2.543244848214685 0.0 33 1.7812956387425568E-4 0.0 0.0 2.6258746996568556 0.0 34 2.0039575935853763E-4 0.0 0.0 2.709551062286787 0.0 35 2.0039575935853763E-4 0.0 0.0 2.8122204896648113 0.0 36 2.0039575935853763E-4 0.0 0.0 2.9062728993904186 0.0 37 2.0039575935853763E-4 0.0 0.0 3.0001026471611825 0.0 38 2.0039575935853763E-4 0.0 0.0 3.096715669367482 0.0 39 2.0039575935853763E-4 0.0 0.0 3.2039719330152683 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATAT 25 3.8926242E-5 45.0 37 TCGTAAG 180 0.0 41.25 1 GTATGCG 210 0.0 40.714287 1 CGGTCTA 170 0.0 39.705883 31 TACGGGA 585 0.0 39.615383 4 CGTTTTT 17845 0.0 38.859623 1 GTATACG 145 0.0 38.793106 1 CGTATCA 35 6.2523486E-6 38.571426 39 ATAGGGC 2075 0.0 37.73494 4 GCTACGA 455 0.0 37.582417 10 TTACGAG 210 0.0 37.5 1 TCGAACA 30 1.1404506E-4 37.499996 15 GGCGATA 2330 0.0 37.371246 8 ACGTTAG 205 0.0 37.317074 1 GACCGAT 2460 0.0 37.317074 9 TGGGCGA 2635 0.0 37.31499 6 GCGTAAG 260 0.0 37.21154 1 ACGGGTA 430 0.0 36.627907 5 ACCGTTC 80 0.0 36.562504 12 GGGCGAT 9790 0.0 36.54239 7 >>END_MODULE