SRR1545392_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545392_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	101000
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	590	0.5841584158415841	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	202	0.2	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	189	0.18712871287128713	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	106	0.10495049504950496	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATGC	20	7.0027326E-4	45.000004	8
ACGCCGG	20	7.0027326E-4	45.000004	27
CCCTCGT	20	7.0027326E-4	45.000004	14
CCTAGGG	20	7.0027326E-4	45.000004	3
TATGGGT	20	7.0027326E-4	45.000004	4
TGGGTCA	20	7.0027326E-4	45.000004	6
GGCAAGT	20	7.0027326E-4	45.000004	2
ATAGCGG	20	7.0027326E-4	45.000004	2
TACGGGA	40	6.708433E-9	45.000004	4
GCCGATT	20	7.0027326E-4	45.000004	9
ACGGCGA	30	2.1458236E-6	45.000004	16
CTTGCGG	20	7.0027326E-4	45.000004	2
GGTATGC	30	2.1458236E-6	45.000004	8
GCGATGT	20	7.0027326E-4	45.000004	9
GCAGGGC	30	2.1458236E-6	45.000004	4
TAGATGG	20	7.0027326E-4	45.000004	2
TCTCACT	40	6.708433E-9	45.000004	44
TAGTGGT	20	7.0027326E-4	45.000004	15
CGGTAGT	20	7.0027326E-4	45.000004	12
CGGTAGG	20	7.0027326E-4	45.000004	31