SRR1545385_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545385_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3854120
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	11890	0.3085010326611522	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7919	0.20546843377995494	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATCCG	170	0.0	45.000004	1
CCCGTAG	20	7.035356E-4	45.0	1
TACGCAT	35	1.2129203E-7	45.0	40
TACGACA	20	7.035356E-4	45.0	19
CCGCGTA	20	7.035356E-4	45.0	40
CAGTCGA	35	1.2129203E-7	45.0	39
TCGACAC	40	6.8230293E-9	45.0	14
TATCCGG	185	0.0	45.0	2
CACGCGA	30	2.1668384E-6	44.999996	28
ATATCGT	30	2.1668384E-6	44.999996	10
CTCGATT	30	2.1668384E-6	44.999996	37
ACGTTAG	115	0.0	43.04348	1
CGTTTTT	8530	0.0	41.96659	1
CGGTCGA	65	0.0	41.53846	11
GTACCGA	50	1.0822987E-9	40.5	9
GGCGTAT	50	1.0822987E-9	40.5	8
CTTATCG	45	1.9303116E-8	40.0	13
CTACGAT	45	1.9303116E-8	40.0	20
CGACGAA	40	3.4610457E-7	39.375	31
CGTTCGA	40	3.4610457E-7	39.375	14