SRR1545378_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545378_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2284551
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5291	0.23159911947686876	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5144	0.22516459470591815	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.03475E-4	45.000004	21
ATCGTAC	20	7.03475E-4	45.000004	11
GCGATCG	20	7.03475E-4	45.000004	9
AATCGTA	60	0.0	45.000004	12
CGAACTA	25	3.8920196E-5	45.0	25
CGTACTC	25	3.8920196E-5	45.0	31
CAATACG	70	0.0	45.0	1
TACGTAG	110	0.0	45.0	1
TATTACG	75	0.0	42.000004	1
ACGTATG	75	0.0	39.000004	1
CGTTAGT	35	6.2510007E-6	38.571426	23
TATCGTG	70	0.0	38.571426	1
CACGACC	310	0.0	38.46774	27
TATGGGC	765	0.0	37.941174	4
TATGGGA	1305	0.0	37.931034	4
TGTTGCG	120	0.0	37.500004	1
CACTCGA	30	1.1402749E-4	37.500004	28
CGAATCG	30	1.1402749E-4	37.500004	36
ATTGCGT	60	1.5643309E-10	37.500004	14
TGTACGC	30	1.1402749E-4	37.500004	21